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Aliases for LINC02447 Gene

Subcategory (RNA class) for LINC02447 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02447 Gene

  • Long Intergenic Non-Protein Coding RNA 2447 2 3 5

External Ids for LINC02447 Gene

Summaries for LINC02447 Gene

GeneCards Summary for LINC02447 Gene

LINC02447 (Long Intergenic Non-Protein Coding RNA 2447) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02447 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02447 Gene

Genomics for LINC02447 Gene

GeneHancer (GH) Regulatory Elements for LINC02447 Gene

Promoters and enhancers for LINC02447 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I007102 Promoter/Enhancer 1.5 Ensembl ENCODE 564.1 -0.1 -135 3 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF48 YY1 GTF3C2 POLR2B LINC02447 GRPEL1 GC04M007112 RN7SKP36
GH04I007094 Enhancer 0.3 ENCODE 12 +8.1 8132 1.2 ID3 LINC02447 GC04P007090 LOC105374370
GH04I007539 Enhancer 0.7 ENCODE 5.1 -436.5 -436463 1.3 KLF1 ZIC2 POLR2A PATZ1 VEZF1 KLF8 SP3 MAZ SP2 GABPA LINC02447 GC04M007519 AFAP1-AS1 SORCS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC02447 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02447 Gene

Genomic Locations for LINC02447 Gene
chr4:7,094,571-7,103,385
(GRCh38/hg38)
Size:
8,815 bases
Orientation:
Minus strand
chr4:7,096,298-7,105,112
(GRCh37/hg19)

Genomic View for LINC02447 Gene

Genes around LINC02447 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02447 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02447 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02447 Gene

Proteins for LINC02447 Gene

Post-translational modifications for LINC02447 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02447 Gene

Domains & Families for LINC02447 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02447 Gene

Function for LINC02447 Gene

Phenotypes for LINC02447 Gene

GenomeRNAi human phenotypes for LINC02447:
genes like me logo Genes that share phenotypes with LINC02447: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02447 Gene

Localization for LINC02447 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02447 Gene

Pathways & Interactions for LINC02447 Gene

SuperPathways for LINC02447 Gene

No Data Available

Interacting Proteins for LINC02447 Gene

Gene Ontology (GO) - Biological Process for LINC02447 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02447 Gene

Drugs & Compounds for LINC02447 Gene

No Compound Related Data Available

Transcripts for LINC02447 Gene

mRNA/cDNA for LINC02447 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02447 Gene

No ASD Table

Relevant External Links for LINC02447 Gene

GeneLoc Exon Structure for
LINC02447
ECgene alternative splicing isoforms for
LINC02447

Expression for LINC02447 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02447 Gene

Orthologs for LINC02447 Gene

Evolution for LINC02447 Gene

ENSEMBL:
Gene Tree for LINC02447 (if available)
TreeFam:
Gene Tree for LINC02447 (if available)

No data available for Orthologs for LINC02447 Gene

Paralogs for LINC02447 Gene

No data available for Paralogs for LINC02447 Gene

Variants for LINC02447 Gene

Sequence variations from dbSNP and Humsavar for LINC02447 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000169187 -- 7,097,329(-) T/C downstream_transcript_variant
rs1000202890 -- 7,097,106(-) G/A downstream_transcript_variant
rs1000228070 -- 7,105,125(-) GTGATTCTCCTG/G upstream_transcript_variant
rs1000535336 -- 7,100,844(-) A/C intron_variant
rs1000608177 -- 7,099,471(-) AAAAAAAA/AAAAA/AAAAAAA/AAAAAAAAA intron_variant

Additional Variant Information for LINC02447 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02447

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02447 Gene

Disorders for LINC02447 Gene

Additional Disease Information for LINC02447

No disorders were found for LINC02447 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02447 Gene

Publications for LINC02447 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 58

Products for LINC02447 Gene

Sources for LINC02447 Gene

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