Aliases for LINC02446 Gene

Subcategory (RNA class) for LINC02446 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC02446 Gene

  • Long Intergenic Non-Protein Coding RNA 2446 2 3 5
  • LINC02446 2 170
  • Lnc-EIF2S3B-2 170
  • NONHSAG010487 94
  • NONHSAG010486 94
  • HSALNG0089242 169

External Ids for LINC02446 Gene

Summaries for LINC02446 Gene

GeneCards Summary for LINC02446 Gene

LINC02446 (Long Intergenic Non-Protein Coding RNA 2446) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02446 include Colorectal Cancer.

Additional gene information for LINC02446 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02446 Gene

Genomics for LINC02446 Gene

GeneHancer (GH) Regulatory Elements for LINC02446 Gene

Promoters and enhancers for LINC02446 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J010554 Enhancer 0.6 ENCODE dbSUPER 750.6 +0.6 607 0 ZBED1 SMAD5 CBFB LINC02446 LOC105369658 SLC25A39P2 lnc-MAGOHB-2 lnc-EIF2S3B-5
GH12J010553 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 8.6 +2.2 2188 2.5 ZBED1 SMAD5 CBFB EED RUNX3 ATF2 KLRK1 KLRC4 KLRC1 KLRD1 LINC02446 KLRA1P KLRC4-KLRK1 KLRC3 KLRC2 lnc-EIF2S3B-5
GH12J010557 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 6.1 +5.9 5861 2.9 ZNF24 RELA ZBED1 SMAD5 CBFB EED RUNX3 JUNB CTCF ATF2 KLRK1 KLRC4 KLRC1 KLRD1 KLRC4-KLRK1 KLRA1P LINC02446 KLRC3 KLRC2 lnc-EIF2S3B-5
GH12J010556 Enhancer 0.3 Ensembl dbSUPER 6.2 +3.9 3940 0.4 LINC02446 KLRA1P lnc-EIF2S3B-5
GH12J010562 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 +8.9 8940 2.8 CTCF RAD21 REST TRIM22 ZNF10 SMC3 KLRC1 KLRK1 STYK1 KLRA1P TMEM52B ENSG00000245648 KLRC3 KLRC2 lnc-EIF2S3B-5 LINC02446
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02446 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02446 Gene

Genomic Locations for LINC02446 Gene
chr12:10,552,661-10,575,720
(GRCh38/hg38)
Size:
23,060 bases
Orientation:
Plus strand

Genomic View for LINC02446 Gene

Genes around LINC02446 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02446 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02446 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02446 Gene

Proteins for LINC02446 Gene

Post-translational modifications for LINC02446 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02446 Gene

Domains & Families for LINC02446 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02446 Gene

Function for LINC02446 Gene

Phenotypes From GWAS Catalog for LINC02446 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02446 Gene

Localization for LINC02446 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02446 Gene

Pathways & Interactions for LINC02446 Gene

PathCards logo

SuperPathways for LINC02446 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02446 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02446 Gene

Drugs & Compounds for LINC02446 Gene

No Compound Related Data Available

Transcripts for LINC02446 Gene

mRNA/cDNA for LINC02446 Gene

(2) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(9) RNACentral transcripts :
(5) NONCODE transcripts :
(6) LNCipedia transcripts :
(4) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02446 Gene

No ASD Table

Relevant External Links for LINC02446 Gene

GeneLoc Exon Structure for
LINC02446
ECgene alternative splicing isoforms for
LINC02446

Expression for LINC02446 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02446 Gene

Orthologs for LINC02446 Gene

Evolution for LINC02446 Gene

ENSEMBL:
Gene Tree for LINC02446 (if available)
TreeFam:
Gene Tree for LINC02446 (if available)

No data available for Orthologs for LINC02446 Gene

Paralogs for LINC02446 Gene

No data available for Paralogs for LINC02446 Gene

Variants for LINC02446 Gene

Sequence variations from dbSNP and Humsavar for LINC02446 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000130007 -- 10,575,502(+) G/A genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000322698 -- 10,558,641(+) T/A intron_variant, non_coding_transcript_variant
rs1000390223 -- 10,551,694(+) G/A upstream_transcript_variant
rs1000496036 -- 10,565,775(+) T/C genic_downstream_transcript_variant, intron_variant
rs1000556186 -- 10,555,373(+) T/G intron_variant

Additional Variant Information for LINC02446 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02446

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02446 Gene

Disorders for LINC02446 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC02446 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC02446

genes like me logo Genes that share disorders with LINC02446: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02446 Gene

Publications for LINC02446 Gene

No publications were found for LINC02446 Gene.

Products for LINC02446 Gene

Sources for LINC02446 Gene