Aliases for LINC02445 Gene

Data sources for LINC02445 Gene:

RNA type for LINC02445 Gene

lncRNA

Aliases for LINC02445 Gene

External Ids for LINC02445 Gene

Summaries for LINC02445 Gene

GeneCards Summary for LINC02445 Gene

LINC02445 (Long Intergenic Non-Protein Coding RNA 2445) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02445 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02445 Gene

Genomics for LINC02445 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02445 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J073768 Enhancer 0.6 Ensembl 6.3 +10.5 10544 1.2 FOXA2 RXRA FOXP1 BCL6 HNF4A HMG20B BHLHE40 MIXL1 TCF7 SOX13 piR-47820-002 LINC02445 lnc-KCNC2-9 LINC02882 ATXN7L3B
GH12J073745 Enhancer 0.2 Ensembl 4.7 -12.8 -12756 0.6 LINC02445 piR-57133-124 LINC02882 ATXN7L3B
GH12J073770 Enhancer 0.2 Ensembl 0.4 +11.5 11544 0.4 ATXN7L3B piR-47820-002 LINC02445 lnc-KCNC2-9 LINC02882
GH12J073746 Enhancer 0.2 Ensembl 0.4 -11.8 -11756 0.2 ATXN7L3B LINC02445 piR-57133-124 LINC02882
GH12J073815 Enhancer 0.2 Ensembl 0.2 +56.7 56743 0.4 ATXN7L3B piR-50357-040 HSALNG0092425 LINC02445 LINC02882
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02445 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02445 Gene

Latest Assembly
chr12:73,758,657-73,846,188
(GRCh38/hg38)
Size:
87,532 bases
Orientation:
Plus strand

Previous Assembly
chr12:74,154,469-74,192,507
(GRCh37/hg19 by Ensembl)
Size:
38,039 bases
Orientation:
Plus strand

Genomic View for LINC02445 Gene

Genes around LINC02445 on UCSC Golden Path with GeneCards custom track
LINC02445 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02445 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02445 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02445 Gene

Proteins for LINC02445 Gene

Post-translational modifications for LINC02445 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02445 Gene

Domains & Families for LINC02445 Gene

Gene Families for LINC02445 Gene

genes like me logo Genes that share domains with LINC02445: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02445 Gene

Function for LINC02445 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02445 Gene

Localization for LINC02445 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02445 Gene

Pathways & Interactions for LINC02445 Gene

PathCards logo

SuperPathways for LINC02445 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02445 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02445 Gene

Drugs & Compounds for LINC02445 Gene

No Compound Related Data Available

Transcripts for LINC02445 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02445 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000005A068_9606 lncRNA 459 4

Ensembl: ENST00000551387 (view in UCSC) ,

LncBook: HSALNT0191462,

LNCipedia: LINC02445:3,

NONCODE: NONHSAT029490.2,

URS0000EF585B_9606 lncRNA 495 1

Ensembl: ENST00000664550 (view in UCSC) ,

URS0001BD4DA4_9606 lncRNA 459 1

LncBook: HSALNT0191462,

LINC02445 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02445 Gene

No ASD Table

Relevant External Links for LINC02445 Gene

GeneLoc Exon Structure for
LINC02445

No data available for mRNA/cDNA for LINC02445 Gene

Expression for LINC02445 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02445

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02445 Gene

Orthologs for LINC02445 Gene

Evolution for LINC02445 Gene

ENSEMBL:
Gene Tree for LINC02445 (if available)
TreeFam:
Gene Tree for LINC02445 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02445

No data available for Orthologs for LINC02445 Gene

Paralogs for LINC02445 Gene

No data available for Paralogs for LINC02445 Gene

Variants for LINC02445 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02445 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02445 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02445
Leiden Open Variation Database (LOVD)
LINC02445

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02445 Gene

Disorders for LINC02445 Gene

No disorders were found for LINC02445 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02445 Gene

Publications for LINC02445 Gene

No publications were found for LINC02445 Gene.

No data available for Mastermind for LINC02445 Gene

Products for LINC02445 Gene

Sources for LINC02445 Gene