Aliases for LINC02444 Gene

Subcategory (RNA class) for LINC02444 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02444 Gene

  • Long Intergenic Non-Protein Coding RNA 2444 2 3 5
  • LINC02444 2 5 165
  • NONHSAG011697.2 91
  • HSALNG0092409 164

External Ids for LINC02444 Gene

Summaries for LINC02444 Gene

GeneCards Summary for LINC02444 Gene

LINC02444 (Long Intergenic Non-Protein Coding RNA 2444) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02444 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02444 Gene

Genomics for LINC02444 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02444 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J073165 Enhancer 0.2 Ensembl 0.4 +5.9 5911 0.2 LINC02444 piR-33605-117
GH12J073166 Enhancer 0.2 Ensembl 0.4 +6.5 6511 0.2 LINC02444 piR-33605-117
GH12J073164 Enhancer 0.2 Ensembl 0.4 +5.3 5311 0.2 LINC02444 piR-33605-117
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02444 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02444 Gene

Genomic Locations for LINC02444 Gene
chr12:73,159,190-73,208,317
(GRCh38/hg38)
Size:
49,128 bases
Orientation:
Plus strand
chr12:73,552,970-73,602,097
(GRCh37/hg19)
Size:
49,128 bases
Orientation:
Plus strand

Genomic View for LINC02444 Gene

Genes around LINC02444 on UCSC Golden Path with GeneCards custom track
LINC02444 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02444 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02444 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02444 Gene

Proteins for LINC02444 Gene

Post-translational modifications for LINC02444 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02444 Gene

Domains & Families for LINC02444 Gene

Gene Families for LINC02444 Gene

genes like me logo Genes that share domains with LINC02444: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02444 Gene

Function for LINC02444 Gene

Phenotypes From GWAS Catalog for LINC02444 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02444 Gene

Localization for LINC02444 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02444 Gene

Pathways & Interactions for LINC02444 Gene

PathCards logo

SuperPathways for LINC02444 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02444 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02444 Gene

Drugs & Compounds for LINC02444 Gene

No Compound Related Data Available

Transcripts for LINC02444 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02444 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005DD776_9606 lncRNA 1256 6

HGNC: 53376,

RefSeq: NR_110130,

Ensembl: ENST00000550723 (view in UCSC) ,

LncBook: HSALNT0191445,

LNCipedia: LINC02444:3,

NONCODE: NONHSAT029486.2,

LINC02444 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02444 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02444 Gene

No ASD Table

Relevant External Links for LINC02444 Gene

GeneLoc Exon Structure for
LINC02444

Expression for LINC02444 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02444 Gene

Orthologs for LINC02444 Gene

Evolution for LINC02444 Gene

ENSEMBL:
Gene Tree for LINC02444 (if available)
TreeFam:
Gene Tree for LINC02444 (if available)

No data available for Orthologs for LINC02444 Gene

Paralogs for LINC02444 Gene

No data available for Paralogs for LINC02444 Gene

Variants for LINC02444 Gene

Additional dbSNP identifiers (rs#s) for LINC02444 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02444 Gene

Variant ID Type Subtype PubMed ID
nsv1040463 CNV loss 25217958
nsv1046165 CNV loss 25217958
nsv559372 CNV loss 21841781
nsv774 CNV insertion 18451855

Additional Variant Information for LINC02444 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02444

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02444 Gene

Disorders for LINC02444 Gene

No disorders were found for LINC02444 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02444 Gene

Publications for LINC02444 Gene

  1. Genome-wide association study identifies genetic loci associated with body mass index and high density lipoprotein-cholesterol levels during psychopharmacological treatment - a cross-sectional naturalistic study. (PMID: 22417934) Athanasiu L … Djurovic S (Psychiatry research 2012) 3

No data available for Mastermind for LINC02444 Gene

Products for LINC02444 Gene

Sources for LINC02444 Gene