Aliases for LINC02443 Gene

Subcategory (RNA class) for LINC02443 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC02443 Gene

  • Long Intergenic Non-Protein Coding RNA 2443 2 3 5
  • LINC02443 2 170
  • HSALNG0088780 169
  • NONHSAG010262 94

External Ids for LINC02443 Gene

Summaries for LINC02443 Gene

GeneCards Summary for LINC02443 Gene

LINC02443 (Long Intergenic Non-Protein Coding RNA 2443) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02443 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02443 Gene

Genomics for LINC02443 Gene

GeneHancer (GH) Regulatory Elements for LINC02443 Gene

Promoters and enhancers for LINC02443 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J005243 Enhancer 0.8 Ensembl ENCODE 750.6 -0.8 -759 5.2 SP1 CBFA2T2 ZNF680 CREB1 ATF7 EP300 FOXK2 ZSCAN29 NCOR1 DPF2 LINC02443 piR-61101-102 LOC105369617
GH12J005222 Enhancer 0.8 Ensembl ENCODE 0.3 +22.8 22760 3.8 TEAD4 SP1 CBFA2T2 ZIC2 POLR2A EP300 MNT EZH2 RUNX3 NCOR1 lnc-ANO2-10 LINC02443 LOC105369617
GH12J005258 Enhancer 0.5 Ensembl ENCODE 0.4 -15.2 -15240 3 WT1 GLIS1 LINC02443 piR-61101-102 LOC105369617
GH12J005204 Enhancer 0.7 Ensembl ENCODE 0.3 +39.9 39860 2 SP1 POLR2A USF1 ZNF143 SIN3A BACH1 lnc-ANO2-10 LINC02443 LOC105369617
GH12J005262 Enhancer 0.4 ENCODE 0.4 -18.4 -18396 1.2 NR2F2 KDM1A RXRA LINC02443 piR-61101-102 LOC105369617
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02443 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02443 Gene

Genomic Locations for LINC02443 Gene
chr12:5,208,104-5,244,261
(GRCh38/hg38)
Size:
36,158 bases
Orientation:
Minus strand
chr12:5,343,163-5,352,317
(GRCh37/hg19)
Size:
9,155 bases
Orientation:
Minus strand

Genomic View for LINC02443 Gene

Genes around LINC02443 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02443 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02443 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02443 Gene

Proteins for LINC02443 Gene

Post-translational modifications for LINC02443 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02443 Gene

Domains & Families for LINC02443 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02443 Gene

Function for LINC02443 Gene

Phenotypes From GWAS Catalog for LINC02443 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02443 Gene

Localization for LINC02443 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02443 Gene

Pathways & Interactions for LINC02443 Gene

PathCards logo

SuperPathways for LINC02443 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02443 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02443 Gene

Drugs & Compounds for LINC02443 Gene

No Compound Related Data Available

Transcripts for LINC02443 Gene

mRNA/cDNA for LINC02443 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(15) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(11) RNACentral transcripts :
(10) NONCODE transcripts :
(9) LNCipedia transcripts :
(9) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02443 Gene

No ASD Table

Relevant External Links for LINC02443 Gene

GeneLoc Exon Structure for
LINC02443
ECgene alternative splicing isoforms for
LINC02443

Expression for LINC02443 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02443 Gene

Orthologs for LINC02443 Gene

Evolution for LINC02443 Gene

ENSEMBL:
Gene Tree for LINC02443 (if available)
TreeFam:
Gene Tree for LINC02443 (if available)

No data available for Orthologs for LINC02443 Gene

Paralogs for LINC02443 Gene

No data available for Paralogs for LINC02443 Gene

Variants for LINC02443 Gene

Sequence variations from dbSNP and Humsavar for LINC02443 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000342183 -- 5,240,191(-) C/A intron_variant
rs1000453936 -- 5,233,632(-) G/A downstream_transcript_variant
rs1000763677 -- 5,235,189(-) A/G genic_downstream_transcript_variant, intron_variant
rs1000824826 -- 5,233,860(-) T/C downstream_transcript_variant
rs1000950316 -- 5,244,440(-) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02443 Gene

Variant ID Type Subtype PubMed ID
dgv1347n100 CNV loss 25217958
esv3580080 CNV loss 25503493
nsv1040098 CNV gain 25217958
nsv483060 CNV loss 15286789
nsv832319 CNV gain 17160897

Additional Variant Information for LINC02443 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02443

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02443 Gene

Disorders for LINC02443 Gene

Additional Disease Information for LINC02443

No disorders were found for LINC02443 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02443 Gene

Publications for LINC02443 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LINC02443 Gene

Products for LINC02443 Gene

Sources for LINC02443 Gene