Aliases for LINC02443 Gene

Subcategory (RNA class) for LINC02443 Gene


Number of RNA Genes sources:

3 / 17

Aliases for LINC02443 Gene

  • Long Intergenic Non-Protein Coding RNA 2443 2 3 5
  • LINC02443 2 5 165
  • NONHSAG010262.2 91
  • HSALNG0088780 164

External Ids for LINC02443 Gene

Summaries for LINC02443 Gene

GeneCards Summary for LINC02443 Gene

LINC02443 (Long Intergenic Non-Protein Coding RNA 2443) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02443 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02443 Gene

Genomics for LINC02443 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02443 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J005243 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 600.7 -0.8 -759 5.2 CREB1 ATF7 TEAD4 EP300 FOXK2 ZSCAN29 POLR2A NCOR1 TAL1 DPF2 LINC02443 ENSG00000256417 LOC105369617 NTF3 KCNA5
GH12J005222 Enhancer 0.9 Ensembl ENCODE 0.4 +22.8 22760 3.8 TEAD4 KDM1A ZIC2 POLR2A EP300 MNT THRA HMBOX1 RUNX3 EZH2 KCNA1 LOC105369616 LINC02443 LOC105369617 KCNA5 NTF3
GH12J005258 Enhancer 0.6 Ensembl ENCODE 0.4 -15.2 -15240 3 CEBPB ESR1 WT1 ZNF660 GLIS1 ENSG00000256417 LINC02443 LOC105369617 NTF3 KCNA5
GH12J005204 Enhancer 0.7 Ensembl ENCODE 0.3 +39.9 39860 2 POLR2A USF1 YY1 SIN3A ZNF143 BACH1 SP1 EGR1 LOC105369616 LINC02443 LOC105369617 KCNA5 NTF3
GH12J005262 Enhancer 0.4 ENCODE 0.4 -18.4 -18396 1.2 NR2F2 RXRA KDM1A MEIS2 ENSG00000256417 LINC02443 LOC105369617 NTF3 KCNA5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02443 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02443 Gene

Genomic Locations for LINC02443 Gene
36,158 bases
Minus strand
9,155 bases
Minus strand

Genomic View for LINC02443 Gene

Genes around LINC02443 on UCSC Golden Path with GeneCards custom track
LINC02443 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02443 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02443 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02443 Gene

Proteins for LINC02443 Gene

Post-translational modifications for LINC02443 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02443 Gene

Domains & Families for LINC02443 Gene

Gene Families for LINC02443 Gene

genes like me logo Genes that share domains with LINC02443: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02443 Gene

Function for LINC02443 Gene

Phenotypes From GWAS Catalog for LINC02443 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02443 Gene

Localization for LINC02443 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02443 Gene

Pathways & Interactions for LINC02443 Gene

PathCards logo

SuperPathways for LINC02443 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02443 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02443 Gene

Drugs & Compounds for LINC02443 Gene

No Compound Related Data Available

Transcripts for LINC02443 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02443 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E36BF_9606 lncRNA 848 5

HGNC: 53375,

RefSeq: NR_120476,

LncBook: HSALNT0184644,

LNCipedia: LINC02443:14,


URS00000EB7E1_9606 lncRNA 585 5

RefSeq: NR_120477,

Ensembl: ENST00000536518 (view in UCSC) ,

LncBook: HSALNT0184649,

LNCipedia: LINC02443:13,


URS00001275A5_9606 lncRNA 626 4

Ensembl: ENST00000540619 (view in UCSC) ,

LncBook: HSALNT0184646,

LNCipedia: LINC02443:17,


URS0000EEF99D_9606 lncRNA 1863 1

Ensembl: ENST00000654905 (view in UCSC) ,

URS0000EF15A3_9606 lncRNA 1471 1

Ensembl: ENST00000652862 (view in UCSC) ,

LINC02443 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02443 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02443 Gene

No ASD Table

Relevant External Links for LINC02443 Gene

GeneLoc Exon Structure for

Expression for LINC02443 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02443

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02443 Gene

Orthologs for LINC02443 Gene

Evolution for LINC02443 Gene

Gene Tree for LINC02443 (if available)
Gene Tree for LINC02443 (if available)

No data available for Orthologs for LINC02443 Gene

Paralogs for LINC02443 Gene

No data available for Paralogs for LINC02443 Gene

Variants for LINC02443 Gene

Additional dbSNP identifiers (rs#s) for LINC02443 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02443 Gene

Variant ID Type Subtype PubMed ID
dgv1347n100 CNV loss 25217958
esv3580080 CNV loss 25503493
nsv1040098 CNV gain 25217958
nsv483060 CNV loss 15286789
nsv832319 CNV gain 17160897

Additional Variant Information for LINC02443 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02443 Gene

Disorders for LINC02443 Gene

No disorders were found for LINC02443 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02443 Gene

Publications for LINC02443 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02443 Gene

Products for LINC02443 Gene

Sources for LINC02443 Gene