Aliases for LINC02440 Gene

Subcategory (RNA class) for LINC02440 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC02440 Gene

  • Long Intergenic Non-Protein Coding RNA 2440 2 3 5
  • LINC02440 2 170
  • HSALNG0094443 169
  • NONHSAG012464 94

External Ids for LINC02440 Gene

Summaries for LINC02440 Gene

GeneCards Summary for LINC02440 Gene

LINC02440 (Long Intergenic Non-Protein Coding RNA 2440) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02440 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02440 Gene

Genomics for LINC02440 Gene

GeneHancer (GH) Regulatory Elements for LINC02440 Gene

Promoters and enhancers for LINC02440 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J118773 Promoter/Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 750.6 +0.6 607 1.2 RFX1 POLR2A ZNF512B BMI1 SIN3A LINC02440 lnc-SRRM4-5 LINC02423
GH12J118370 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 13.7 +401.0 400975 8.7 ZNF785 SIN3A ZNF24 SP1 ZBTB40 CTCF ZBTB6 LCORL SMARCE1 RBPJ SUDS3 TAOK3 lnc-VSIG10-4 LINC02440 SRRM4 WSB2 RFC5 KSR2 PEBP1 ENSG00000270482
GH12J119665 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 13.7 -895.2 -895208 10 SP1 ZBTB40 CTCF MLX RBPJ SMARCE1 POLR2A NR2F6 CREB1 HCFC1 PRKAB1 piR-57461-054 GCN1 RPLP0 RAB35 CABP1 LINC02440 CIT ENSG00000256008 SRRM4
GH12J118770 Enhancer 0.3 Ensembl ENCODE 0.4 +5.0 5037 1 LINC02423 LINC02440
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02440 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02440 Gene

Genomic Locations for LINC02440 Gene
chr12:118,772,918-118,775,138
(GRCh38/hg38)
Size:
2,221 bases
Orientation:
Minus strand
chr12:119,210,837-119,212,942
(GRCh37/hg19)
Size:
2,106 bases
Orientation:
Minus strand

Genomic View for LINC02440 Gene

Genes around LINC02440 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02440 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02440 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02440 Gene

Proteins for LINC02440 Gene

Post-translational modifications for LINC02440 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02440 Gene

Domains & Families for LINC02440 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02440 Gene

Function for LINC02440 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02440 Gene

Localization for LINC02440 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02440 Gene

Pathways & Interactions for LINC02440 Gene

PathCards logo

SuperPathways for LINC02440 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02440 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02440 Gene

Drugs & Compounds for LINC02440 Gene

No Compound Related Data Available

Transcripts for LINC02440 Gene

mRNA/cDNA for LINC02440 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(10) RNACentral transcripts :
(8) LNCipedia transcripts :
(6) NONCODE transcripts :
(3) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02440 Gene

No ASD Table

Relevant External Links for LINC02440 Gene

GeneLoc Exon Structure for
LINC02440
ECgene alternative splicing isoforms for
LINC02440

Expression for LINC02440 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02440 Gene

Orthologs for LINC02440 Gene

Evolution for LINC02440 Gene

ENSEMBL:
Gene Tree for LINC02440 (if available)
TreeFam:
Gene Tree for LINC02440 (if available)

No data available for Orthologs for LINC02440 Gene

Paralogs for LINC02440 Gene

No data available for Paralogs for LINC02440 Gene

Variants for LINC02440 Gene

Sequence variations from dbSNP and Humsavar for LINC02440 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000909872 -- 118,773,679(-) C/G non_coding_transcript_variant
rs1001457720 -- 118,774,655(-) G/C genic_upstream_transcript_variant, non_coding_transcript_variant, upstream_transcript_variant
rs1002420192 -- 118,774,092(-) G/A intron_variant
rs1003090799 -- 118,775,286(-) C/T upstream_transcript_variant
rs1003823808 -- 118,775,304(-) G/A upstream_transcript_variant

Additional Variant Information for LINC02440 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02440

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02440 Gene

Disorders for LINC02440 Gene

No disorders were found for LINC02440 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02440 Gene

Publications for LINC02440 Gene

No publications were found for LINC02440 Gene.

No data available for External Links for LINC02440 Gene

Products for LINC02440 Gene

Sources for LINC02440 Gene