Aliases for LINC02433 Gene

Data sources for LINC02433 Gene:

Subcategory (RNA class) for LINC02433 Gene

lncRNA

Aliases for LINC02433 Gene

External Ids for LINC02433 Gene

Summaries for LINC02433 Gene

GeneCards Summary for LINC02433 Gene

LINC02433 (Long Intergenic Non-Protein Coding RNA 2433) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02433 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02433 Gene

Genomics for LINC02433 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02433 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J157557 Enhancer 0.2 Ensembl 0.4 -14.5 -14488 1.2 LINC02272 LINC02433 LOC107986238 ENSG00000286133 GRIA2 GASK1B
GH04J157596 Enhancer 0.2 Ensembl 0.3 +24.7 24712 0.8 HSALNG0038129 HSALNG0038127 LINC02433 ENSG00000286133 GRIA2 GASK1B
GH04J157590 Enhancer 0.2 Ensembl 0.4 +18.4 18412 0.2 LINC02433 HSALNG0038127 HSALNG0038129 ENSG00000286133 GRIA2 GASK1B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02433 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02433 Gene

Latest Assembly
chr4:157,572,489-157,576,155
(GRCh38/hg38)
Size:
3,667 bases
Orientation:
Plus strand

Previous Assembly
chr4:158,493,642-158,497,306
(GRCh37/hg19 by Entrez Gene)
Size:
3,665 bases
Orientation:
Plus strand

chr4:158,493,642-158,497,306
(GRCh37/hg19 by Ensembl)
Size:
3,665 bases
Orientation:
Plus strand

Genomic View for LINC02433 Gene

Genes around LINC02433 on UCSC Golden Path with GeneCards custom track
LINC02433 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02433 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02433 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02433 Gene

Proteins for LINC02433 Gene

Post-translational modifications for LINC02433 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02433 Gene

Domains & Families for LINC02433 Gene

Gene Families for LINC02433 Gene

genes like me logo Genes that share domains with LINC02433: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02433 Gene

Function for LINC02433 Gene

Phenotypes for LINC02433 Gene

GenomeRNAi human phenotypes for LINC02433:
genes like me logo Genes that share phenotypes with LINC02433: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02433 Gene

Localization for LINC02433 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02433 Gene

Pathways & Interactions for LINC02433 Gene

PathCards logo

SuperPathways for LINC02433 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02433 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02433 Gene

Drugs & Compounds for LINC02433 Gene

No Compound Related Data Available

Transcripts for LINC02433 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02433 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000050E855_9606 lncRNA 1395 3

Ensembl: ENST00000507108 (view in UCSC) ,

LNCipedia: LINC02433:8,

NONCODE: NONHSAT098972.2,

URS000026E314_9606 lncRNA 1119 3

Ensembl: ENST00000455598 (view in UCSC) ,

LNCipedia: LINC02433:10,

NONCODE: NONHSAT098973.2,

URS0000133C6F_9606 lncRNA 1022 2

Ensembl: ENST00000509450 (view in UCSC) ,

LNCipedia: LINC02433:11,

URS00009BD9BF_9606 lncRNA 1493 1

NONCODE: NONHSAT199320.1,

URS00008B9224_9606 lncRNA 1392 1

LNCipedia: LINC02433:9,

LINC02433 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02433 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02433 Gene

No ASD Table

Relevant External Links for LINC02433 Gene

GeneLoc Exon Structure for
LINC02433

Expression for LINC02433 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02433

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02433 Gene

Orthologs for LINC02433 Gene

Evolution for LINC02433 Gene

ENSEMBL:
Gene Tree for LINC02433 (if available)
TreeFam:
Gene Tree for LINC02433 (if available)

No data available for Orthologs for LINC02433 Gene

Paralogs for LINC02433 Gene

No data available for Paralogs for LINC02433 Gene

Variants for LINC02433 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02433 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02433 Gene

Variant ID Type Subtype PubMed ID
nsv1018387 CNV gain 25217958

Additional Variant Information for LINC02433 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02433

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02433 Gene

Disorders for LINC02433 Gene

Additional Disease Information for LINC02433

No disorders were found for LINC02433 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02433 Gene

Publications for LINC02433 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02433 Gene

Products for LINC02433 Gene

Sources for LINC02433 Gene