Aliases for LINC02424 Gene

Data sources for LINC02424 Gene:

RNA type for LINC02424 Gene

lncRNA

Aliases for LINC02424 Gene

External Ids for LINC02424 Gene

Summaries for LINC02424 Gene

GeneCards Summary for LINC02424 Gene

LINC02424 (Long Intergenic Non-Protein Coding RNA 2424) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02424 include Degenerative Disc Disease.

Additional gene information for LINC02424 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02424 Gene

Genomics for LINC02424 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02424 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J078359 Promoter 0.3 EPDnew 250.7 +1.8 1816 0.1 LINC02424 LOC105369859 ENSG00000258084 SYT1
GH12J078406 Enhancer 0.7 Ensembl ENCODE 0.3 -45.0 -45047 2.8 BATF JUNB ZNF217 PKNOX1 ARID3A IKZF1 L3MBTL2 EP300 USF1 lnc-PAWR-5 LINC02424 ENSG00000258084 SYT1
GH12J078403 Enhancer 0.6 Ensembl ENCODE 0.3 -41.5 -41500 2.1 JUND POLR2A EP300 CEBPB lnc-PAWR-5 LINC02424 ENSG00000258084 SYT1
GH12J078332 Enhancer 0.4 Ensembl 0.3 +29.6 29554 0.4 SOX13 POLR2A RFX3 LOC105369859 LINC02424 piR-39341-091 ENSG00000258084 SYT1
GH12J078419 Enhancer 0.5 Ensembl 0.2 -57.8 -57809 0.9 JUND ATF2 JUN CREB1 ATF7 lnc-PAWR-5 LINC02424 ENSG00000258084 SYT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02424 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02424 Gene

Latest Assembly
chr12:78,324,178-78,361,554
(GRCh38/hg38)
Size:
37,377 bases
Orientation:
Minus strand

Previous Assembly
chr12:78,720,460-78,753,526
(GRCh37/hg19 by Entrez Gene)
Size:
33,067 bases
Orientation:
Minus strand

chr12:78,720,460-78,753,526
(GRCh37/hg19 by Ensembl)
Size:
33,067 bases
Orientation:
Minus strand

Genomic View for LINC02424 Gene

Genes around LINC02424 on UCSC Golden Path with GeneCards custom track
LINC02424 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02424 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02424 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02424 Gene

Proteins for LINC02424 Gene

Post-translational modifications for LINC02424 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02424 Gene

Domains & Families for LINC02424 Gene

Gene Families for LINC02424 Gene

genes like me logo Genes that share domains with LINC02424: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02424 Gene

Function for LINC02424 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02424 Gene

Localization for LINC02424 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02424 Gene

Pathways & Interactions for LINC02424 Gene

PathCards logo

SuperPathways for LINC02424 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02424 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02424 Gene

Drugs & Compounds for LINC02424 Gene

No Compound Related Data Available

Transcripts for LINC02424 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02424 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000046C2B0_9606 lncRNA 1266 3

Ensembl: ENST00000548512 (view in UCSC) ,

LNCipedia: LINC02424:3,

NONCODE: NONHSAT029625.2,

URS00008C1E23_9606 lncRNA 1264 1

RefSeq: NR_135021,

URS00009B34C5_9606 lncRNA 1281 2

LncBook: HSALNT0191894,

NONCODE: NONHSAT163760.1,

URS0001BE26AC_9606 lncRNA 5574 1

LncBook: HSALNT0191893,

URS0001BDD514_9606 lncRNA 1281 1

LncBook: HSALNT0191894,

LINC02424 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02424 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02424 Gene

No ASD Table

Relevant External Links for LINC02424 Gene

GeneLoc Exon Structure for
LINC02424

Expression for LINC02424 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02424

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02424 Gene

Orthologs for LINC02424 Gene

Evolution for LINC02424 Gene

ENSEMBL:
Gene Tree for LINC02424 (if available)
TreeFam:
Gene Tree for LINC02424 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02424

No data available for Orthologs for LINC02424 Gene

Paralogs for LINC02424 Gene

No data available for Paralogs for LINC02424 Gene

Variants for LINC02424 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02424 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02424 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02424
Leiden Open Variation Database (LOVD)
LINC02424

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02424 Gene

Disorders for LINC02424 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC02424 Gene - From: LNC

Disorder Aliases PubMed IDs
degenerative disc disease
  • cervical disc degenerative disease
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC02424

genes like me logo Genes that share disorders with LINC02424: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02424 Gene

Publications for LINC02424 Gene

  1. Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data. (PMID: 26556537) Chen Y … Fu Q (Medical science monitor : international medical journal of experimental and clinical research 2015) 72
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC02424 Gene

Sources for LINC02424 Gene