Aliases for LINC02421 Gene

Subcategory (RNA class) for LINC02421 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02421 Gene

  • Long Intergenic Non-Protein Coding RNA 2421 2 3 5
  • LINC02421 2 5 165
  • NONHSAG011596.2 91
  • HSALNG0092121 164

External Ids for LINC02421 Gene

Summaries for LINC02421 Gene

GeneCards Summary for LINC02421 Gene

LINC02421 (Long Intergenic Non-Protein Coding RNA 2421) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02421 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02421 Gene

Genomics for LINC02421 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02421 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J067730 Enhancer 0.5 Ensembl 600.7 +1.1 1075 0.4 POLR2A CEBPA RCOR1 HLF GATA2 LINC02421 ENSG00000235872 piR-58297-118 DYRK2 IFNG
GH12J067729 Enhancer 0.2 Ensembl 600.7 +2.0 1975 0.2 LINC02421 ENSG00000235872 piR-58297-118 DYRK2 IFNG
GH12J068331 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 4.5 -603.4 -603392 3.7 SP1 CREB1 TEAD4 REST RFX1 CTCF ZNF692 POLR2A FOS LARP7 MDM1 LOC105369819 lnc-IL22-1 lnc-RAP1B-5 piR-57507 NUP107 ENSG00000256273 CPSF6 DYRK2 LINC02421
GH12J068117 Enhancer 0.9 Ensembl ENCODE 10.8 -390.8 -390825 6.2 BACH1 TCF12 IKZF2 EED ARID3A DPF2 RUNX3 GATAD2B BCLAF1 FOSL1 IL26 LINC02421 LOC107984526 lnc-DYRK2-15 IFNG IFNG-AS1 DYRK2
GH12J068174 Enhancer 0.6 ENCODE 14.3 -447.0 -446973 2.9 RELA POLR2A IKZF2 EED DPF2 RELB RUNX3 ZNF580 IKZF1 JUNB LINC02421 IL26 MDM1 LINC01479 IFNG LOC105369818 IFNG-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02421 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02421 Gene

Genomic Locations for LINC02421 Gene
chr12:67,709,047-67,729,476
(GRCh38/hg38)
Size:
20,430 bases
Orientation:
Minus strand
chr12:68,102,827-68,123,255
(GRCh37/hg19)
Size:
20,429 bases
Orientation:
Minus strand

Genomic View for LINC02421 Gene

Genes around LINC02421 on UCSC Golden Path with GeneCards custom track
LINC02421 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02421 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02421 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02421 Gene

Proteins for LINC02421 Gene

Post-translational modifications for LINC02421 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02421 Gene

Domains & Families for LINC02421 Gene

Gene Families for LINC02421 Gene

genes like me logo Genes that share domains with LINC02421: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02421 Gene

Function for LINC02421 Gene

Phenotypes From GWAS Catalog for LINC02421 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02421 Gene

Localization for LINC02421 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02421 Gene

Pathways & Interactions for LINC02421 Gene

PathCards logo

SuperPathways for LINC02421 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02421 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02421 Gene

Drugs & Compounds for LINC02421 Gene

No Compound Related Data Available

Transcripts for LINC02421 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02421 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000024EF03_9606 lncRNA 3135 5

HGNC: 53351,

RefSeq: NR_110063,

Ensembl: ENST00000542219 (view in UCSC) ,

LNCipedia: LINC02421:3,

NONCODE: NONHSAT029267.2,

URS00009C41CC_9606 lncRNA 3135 2

LncBook: HSALNT0190853,

NONCODE: NONHSAT163696.1,

LINC02421 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02421 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02421 Gene

No ASD Table

Relevant External Links for LINC02421 Gene

GeneLoc Exon Structure for
LINC02421

Expression for LINC02421 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02421

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02421 Gene

Orthologs for LINC02421 Gene

Evolution for LINC02421 Gene

ENSEMBL:
Gene Tree for LINC02421 (if available)
TreeFam:
Gene Tree for LINC02421 (if available)

No data available for Orthologs for LINC02421 Gene

Paralogs for LINC02421 Gene

No data available for Paralogs for LINC02421 Gene

Variants for LINC02421 Gene

Additional dbSNP identifiers (rs#s) for LINC02421 Gene

Additional Variant Information for LINC02421 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02421

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02421 Gene

Disorders for LINC02421 Gene

No disorders were found for LINC02421 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02421 Gene

Publications for LINC02421 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02421 Gene

Products for LINC02421 Gene

Sources for LINC02421 Gene