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Aliases for LINC02421 Gene

Subcategory (RNA class) for LINC02421 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02421 Gene

  • Long Intergenic Non-Protein Coding RNA 2421 2 3 5

External Ids for LINC02421 Gene

Summaries for LINC02421 Gene

GeneCards Summary for LINC02421 Gene

LINC02421 (Long Intergenic Non-Protein Coding RNA 2421) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02421 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02421 Gene

Genomics for LINC02421 Gene

GeneHancer (GH) Regulatory Elements for LINC02421 Gene

Promoters and enhancers for LINC02421 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J068174 Enhancer 0.8 Ensembl ENCODE 14.3 -447.0 -446974 2.9 ZNF146 ZNF680 JUNB DPF2 ATF2 RELA POLR2A IKZF1 EED ZNF580 LINC02421 IL26 MDM1 LINC01479 IFNG LOC105369818 IFNG-AS1
GH12J068331 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 4.5 -603.5 -603544 3.4 HDGF PKNOX1 ATF1 ARID4B SIN3A ZNF48 YY1 GLIS2 ELK1 ZNF207 MDM1 LOC105369819 PIR51506 GC12P068332 NUP107 RPL10P12 KRT8P39 CPSF6 ENSG00000256273 LINC02421
GH12J068239 Enhancer 1.1 Ensembl ENCODE 8.8 -511.2 -511179 2.3 HDGF FOXA2 NEUROD1 ZBTB7B IRF4 FOS ATF7 RUNX3 CAVIN1 JUNB MDM1 LINC02384 LINC02421 MDM2 IL26 IL22 LOC105369818
GH12J068223 Enhancer 1.3 FANTOM5 Ensembl ENCODE 6.9 -493.9 -493901 0.8 PKNOX1 ATF1 ARID4B SIN3A ZNF2 IRF4 ARID2 ZNF207 ZNF143 ATF7 MDM1 IL22 LINC02384 NUP107 LINC02421 IL26 GC12P068213 LOC105369818 IFNG-AS1
GH12J068189 Enhancer 0.5 ENCODE 13.9 -460.7 -460693 0.8 FOSL1 JUND FOS PRDM1 LINC02421 IL26 LOC105369818 IFNG IFNG-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02421 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02421 Gene

Genomic Locations for LINC02421 Gene
chr12:67,709,047-67,729,475
(GRCh38/hg38)
Size:
20,429 bases
Orientation:
Minus strand
chr12:68,102,827-68,123,255
(GRCh37/hg19)
Size:
20,429 bases
Orientation:
Minus strand

Genomic View for LINC02421 Gene

Genes around LINC02421 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02421 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02421 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02421 Gene

Proteins for LINC02421 Gene

Post-translational modifications for LINC02421 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02421 Gene

Domains & Families for LINC02421 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02421 Gene

Function for LINC02421 Gene

Phenotypes From GWAS Catalog for LINC02421 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02421 Gene

Localization for LINC02421 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02421 Gene

Pathways & Interactions for LINC02421 Gene

SuperPathways for LINC02421 Gene

No Data Available

Interacting Proteins for LINC02421 Gene

Gene Ontology (GO) - Biological Process for LINC02421 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02421 Gene

Drugs & Compounds for LINC02421 Gene

No Compound Related Data Available

Transcripts for LINC02421 Gene

mRNA/cDNA for LINC02421 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02421 Gene

No ASD Table

Relevant External Links for LINC02421 Gene

GeneLoc Exon Structure for
LINC02421
ECgene alternative splicing isoforms for
LINC02421

Expression for LINC02421 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02421 Gene

Orthologs for LINC02421 Gene

Evolution for LINC02421 Gene

ENSEMBL:
Gene Tree for LINC02421 (if available)
TreeFam:
Gene Tree for LINC02421 (if available)

No data available for Orthologs for LINC02421 Gene

Paralogs for LINC02421 Gene

No data available for Paralogs for LINC02421 Gene

Variants for LINC02421 Gene

Sequence variations from dbSNP and Humsavar for LINC02421 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000009896 -- 67,709,167(-) C/T non_coding_transcript_variant
rs1000209129 -- 67,729,039(-) A/G intron_variant
rs1000392434 -- 67,713,822(-) A/C intron_variant
rs1000561145 -- 67,725,604(-) A/G intron_variant
rs1000617764 -- 67,718,836(-) A/C/T intron_variant

Additional Variant Information for LINC02421 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02421

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02421 Gene

Disorders for LINC02421 Gene

Additional Disease Information for LINC02421

No disorders were found for LINC02421 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02421 Gene

Publications for LINC02421 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC02421 Gene

Sources for LINC02421 Gene

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