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Aliases for LINC02417 Gene

Subcategory (RNA class) for LINC02417 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02417 Gene

  • Long Intergenic Non-Protein Coding RNA 2417 2 3 5

External Ids for LINC02417 Gene

Summaries for LINC02417 Gene

GeneCards Summary for LINC02417 Gene

LINC02417 (Long Intergenic Non-Protein Coding RNA 2417) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02417 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02417 Gene

Genomics for LINC02417 Gene

GeneHancer (GH) Regulatory Elements for LINC02417 Gene

Promoters and enhancers for LINC02417 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J003365 Promoter 1 Ensembl 600.7 -1.3 -1285 1.2 GLIS2 ZBTB8A ZIC2 CTCF EZH2 ZBTB26 ZBTB48 ZFHX2 ZNF777 ZNF335 ENSG00000250770 LINC02417
GH12J003380 Enhancer 0.6 Ensembl ENCODE 0.4 +13.6 13637 1.4 MAFK ZBTB17 PRMT8 LINC02417
GH12J003378 Enhancer 0.4 Ensembl 0.4 +11.9 11915 1.6 SCRT2 SCRT1 PRMT8 LINC02417
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02417 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02417 Gene

Genomic Locations for LINC02417 Gene
chr12:3,367,486-3,371,641
(GRCh38/hg38)
Size:
4,156 bases
Orientation:
Plus strand

Genomic View for LINC02417 Gene

Genes around LINC02417 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02417 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02417 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02417 Gene

Proteins for LINC02417 Gene

Post-translational modifications for LINC02417 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02417 Gene

Domains & Families for LINC02417 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02417 Gene

Function for LINC02417 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02417 Gene

Localization for LINC02417 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02417 Gene

Pathways & Interactions for LINC02417 Gene

PathCards logo

SuperPathways for LINC02417 Gene

No Data Available

Interacting Proteins for LINC02417 Gene

Gene Ontology (GO) - Biological Process for LINC02417 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02417 Gene

Drugs & Compounds for LINC02417 Gene

No Compound Related Data Available

Transcripts for LINC02417 Gene

mRNA/cDNA for LINC02417 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02417 Gene

No ASD Table

Relevant External Links for LINC02417 Gene

GeneLoc Exon Structure for
LINC02417
ECgene alternative splicing isoforms for
LINC02417

Expression for LINC02417 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02417 Gene

Orthologs for LINC02417 Gene

Evolution for LINC02417 Gene

ENSEMBL:
Gene Tree for LINC02417 (if available)
TreeFam:
Gene Tree for LINC02417 (if available)

No data available for Orthologs for LINC02417 Gene

Paralogs for LINC02417 Gene

No data available for Paralogs for LINC02417 Gene

Variants for LINC02417 Gene

Sequence variations from dbSNP and Humsavar for LINC02417 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000197054 -- 3,366,452(+) CCCC/CCCCC upstream_transcript_variant
rs1000223289 -- 3,371,261(+) G/A/T intron_variant
rs1001069694 -- 3,367,406(+) A/G upstream_transcript_variant
rs1001465278 -- 3,366,905(+) G/A upstream_transcript_variant
rs1001528922 -- 3,367,033(+) T/G upstream_transcript_variant

Additional Variant Information for LINC02417 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02417

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02417 Gene

Disorders for LINC02417 Gene

Additional Disease Information for LINC02417

No disorders were found for LINC02417 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02417 Gene

Publications for LINC02417 Gene

No publications were found for LINC02417 Gene.

No data available for External Links for LINC02417 Gene

Products for LINC02417 Gene

Sources for LINC02417 Gene

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