Aliases for LINC02413 Gene

Subcategory (RNA class) for LINC02413 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC02413 Gene

  • Long Intergenic Non-Protein Coding RNA 2413 2 3 5
  • LINC02413 2 170
  • NONHSAG011902 94
  • HSALNG0093083 169

External Ids for LINC02413 Gene

Summaries for LINC02413 Gene

GeneCards Summary for LINC02413 Gene

LINC02413 (Long Intergenic Non-Protein Coding RNA 2413) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02413 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02413 Gene

Genomics for LINC02413 Gene

GeneHancer (GH) Regulatory Elements for LINC02413 Gene

Promoters and enhancers for LINC02413 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J092987 Enhancer 1.3 FANTOM5 Ensembl ENCODE 750.6 +0.3 274 3.5 SP1 CTCF MLX NR2F6 CREB1 MIXL1 JUND MYC ETV6 RELA LINC02413 EEA1 HNRNPA1P50 UBE2N C12orf74 lnc-EEA1-3
GH12J093001 Enhancer 0.9 Ensembl ENCODE 0.4 +14.3 14323 3 SMARCE1 TEAD4 CBFA2T2 SMARCA4 IKZF1 PKNOX1 HDAC1 ZNF316 EP300 SOX6 lnc-EEA1-4 EEA1 UBE2N LINC02413 ENSG00000207365 ENSG00000257322 LOC643339
GH12J093014 Enhancer 1.2 Ensembl ENCODE 0.3 +29.6 29589 7.3 RBPJ SMARCE1 TCF7L2 NR2F6 ATF1 CREB1 MIXL1 CC2D1A NFYC L3MBTL2 ENSG00000271382 RN7SL737P ENSG00000207365 lnc-EEA1-4 LINC02413 ENSG00000257322 LOC643339
GH12J092994 Enhancer 0.8 Ensembl ENCODE 0.4 +7.2 7184 1.8 MLLT1 CREM IKZF1 IKZF2 CBFB DPF2 EED BCL11A RUNX3 BCLAF1 C12orf74 EEA1 lnc-EEA1-3 LINC02413
GH12J093007 Enhancer 0.7 Ensembl 0.4 +19.2 19223 2.4 ETV6 HLF NFIB ZNF652 CEBPG CEBPA GATAD2A IKZF2 ZNF239 SOX13 EEA1 lnc-EEA1-4 ENSG00000207365 LINC02413 ENSG00000257322 LOC643339
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02413 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02413 Gene

Genomic Locations for LINC02413 Gene
chr12:92,988,578-93,020,571
(GRCh38/hg38)
Size:
31,994 bases
Orientation:
Plus strand
chr12:93,392,994-93,413,596
(GRCh37/hg19)
Size:
20,603 bases
Orientation:
Plus strand

Genomic View for LINC02413 Gene

Genes around LINC02413 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02413 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02413 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02413 Gene

Proteins for LINC02413 Gene

Post-translational modifications for LINC02413 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02413 Gene

Domains & Families for LINC02413 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02413 Gene

Function for LINC02413 Gene

Phenotypes From GWAS Catalog for LINC02413 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02413 Gene

Localization for LINC02413 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02413 Gene

Pathways & Interactions for LINC02413 Gene

PathCards logo

SuperPathways for LINC02413 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02413 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02413 Gene

Drugs & Compounds for LINC02413 Gene

No Compound Related Data Available

Transcripts for LINC02413 Gene

mRNA/cDNA for LINC02413 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(8) RNACentral transcripts :
(7) LNCipedia transcripts :
(6) NONCODE transcripts :
(1) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02413 Gene

No ASD Table

Relevant External Links for LINC02413 Gene

GeneLoc Exon Structure for
LINC02413
ECgene alternative splicing isoforms for
LINC02413

Expression for LINC02413 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02413 Gene

Orthologs for LINC02413 Gene

Evolution for LINC02413 Gene

ENSEMBL:
Gene Tree for LINC02413 (if available)
TreeFam:
Gene Tree for LINC02413 (if available)

No data available for Orthologs for LINC02413 Gene

Paralogs for LINC02413 Gene

No data available for Paralogs for LINC02413 Gene

Variants for LINC02413 Gene

Sequence variations from dbSNP and Humsavar for LINC02413 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000001022 -- 92,993,843(+) A/G intron_variant
rs1000039543 -- 92,991,667(+) T/G intron_variant
rs1000461507 -- 92,991,884(+) G/C intron_variant
rs1000527482 -- 93,016,666(+) T/C intron_variant
rs1000550214 -- 92,996,647(+) C/T intron_variant

Additional Variant Information for LINC02413 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02413

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02413 Gene

Disorders for LINC02413 Gene

No disorders were found for LINC02413 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02413 Gene

Publications for LINC02413 Gene

No publications were found for LINC02413 Gene.

No data available for External Links for LINC02413 Gene

Products for LINC02413 Gene

Sources for LINC02413 Gene