Aliases for LINC02413 Gene

Subcategory (RNA class) for LINC02413 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02413 Gene

  • Long Intergenic Non-Protein Coding RNA 2413 2 3 5
  • LINC02413 2 5 165
  • NONHSAG011902.2 91
  • HSALNG0093083 164

External Ids for LINC02413 Gene

Summaries for LINC02413 Gene

GeneCards Summary for LINC02413 Gene

LINC02413 (Long Intergenic Non-Protein Coding RNA 2413) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02413 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02413 Gene

Genomics for LINC02413 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02413 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J092987 Enhancer 1.3 FANTOM5 Ensembl ENCODE 600.7 +0.3 274 3.5 SP1 CREB1 GATAD2A CTCF ATF7 RCOR2 POLR2A FOXA1 JUND ZNF143 LINC02413 UBE2N lnc-EEA1-3 EEA1 NUDT4
GH12J093001 Enhancer 0.9 Ensembl ENCODE 0.4 +14.3 14323 3 IKZF1 JUND FOXA1 PKNOX1 HDAC1 SOX6 TCF12 EP300 ZBTB44 CTBP1 lnc-EEA1-4 EEA1 UBE2N LINC02413 ENSG00000207365 ENSG00000257322 LOC643339 NUDT4
GH12J093014 Enhancer 1.2 Ensembl ENCODE 0.3 +29.6 29589 7.3 GATAD2A ATF7 PRDM10 ZNF629 TFE3 LEF1 SOX13 IKZF1 ZNF692 RCOR2 ENSG00000271382 RN7SL737P ENSG00000207365 lnc-EEA1-4 LINC02413 EEA1 ENSG00000257322 LOC643339 NUDT4
GH12J092994 Enhancer 0.8 Ensembl ENCODE 0.4 +7.2 7184 1.8 IKZF2 EED DPF2 RELB RUNX3 BCLAF1 CBFB BCL11A IKZF1 JUNB EEA1 lnc-EEA1-3 LINC02413 NUDT4
GH12J093007 Enhancer 0.7 Ensembl 0.4 +19.2 19223 2.4 GATAD2A FOXA1 RBFOX2 IKZF2 ZNF239 CEBPA EED SOX13 ZBTB44 DPF2 EEA1 lnc-EEA1-4 ENSG00000207365 LINC02413 ENSG00000257322 LOC643339 NUDT4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02413 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02413 Gene

Genomic Locations for LINC02413 Gene
chr12:92,988,578-93,020,580
(GRCh38/hg38)
Size:
32,003 bases
Orientation:
Plus strand
chr12:93,392,994-93,413,596
(GRCh37/hg19)
Size:
20,603 bases
Orientation:
Plus strand

Genomic View for LINC02413 Gene

Genes around LINC02413 on UCSC Golden Path with GeneCards custom track
LINC02413 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02413 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02413 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02413 Gene

Proteins for LINC02413 Gene

Post-translational modifications for LINC02413 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02413 Gene

Domains & Families for LINC02413 Gene

Gene Families for LINC02413 Gene

genes like me logo Genes that share domains with LINC02413: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02413 Gene

Function for LINC02413 Gene

Phenotypes From GWAS Catalog for LINC02413 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02413 Gene

Localization for LINC02413 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02413 Gene

Pathways & Interactions for LINC02413 Gene

PathCards logo

SuperPathways for LINC02413 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02413 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02413 Gene

Drugs & Compounds for LINC02413 Gene

No Compound Related Data Available

Transcripts for LINC02413 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02413 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005AF06D_9606 lncRNA 898 4

HGNC: 53342,

Ensembl: ENST00000552353 (view in UCSC) ,

LNCipedia: LINC02413:11,

NONCODE: NONHSAT029903.2,

URS0000339097_9606 lncRNA 723 4

Ensembl: ENST00000549914 (view in UCSC) ,

LncBook: HSALNT0193137,

LNCipedia: LINC02413:13,

NONCODE: NONHSAT029906.2,

URS00008BEFB8_9606 lncRNA 1112 2

LNCipedia: LINC02413:10,

NONCODE: NONHSAT029901.2,

URS00008BEFB3_9606 lncRNA 1050 2

LNCipedia: LINC02413:14,

NONCODE: NONHSAT029908.2,

URS00008BD73A_9606 lncRNA 898 2

LNCipedia: LINC02413:12,

NONCODE: NONHSAT029905.2,

LINC02413 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02413 Gene

No ASD Table

Relevant External Links for LINC02413 Gene

GeneLoc Exon Structure for
LINC02413

No data available for mRNA/cDNA for LINC02413 Gene

Expression for LINC02413 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02413 Gene

Orthologs for LINC02413 Gene

Evolution for LINC02413 Gene

ENSEMBL:
Gene Tree for LINC02413 (if available)
TreeFam:
Gene Tree for LINC02413 (if available)

No data available for Orthologs for LINC02413 Gene

Paralogs for LINC02413 Gene

No data available for Paralogs for LINC02413 Gene

Variants for LINC02413 Gene

Additional dbSNP identifiers (rs#s) for LINC02413 Gene

Additional Variant Information for LINC02413 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02413

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02413 Gene

Disorders for LINC02413 Gene

Additional Disease Information for LINC02413

No disorders were found for LINC02413 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02413 Gene

Publications for LINC02413 Gene

No publications were found for LINC02413 Gene.

No data available for Mastermind for LINC02413 Gene

Products for LINC02413 Gene

Sources for LINC02413 Gene