Aliases for LINC02412 Gene

Subcategory (RNA class) for LINC02412 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC02412 Gene

  • Long Intergenic Non-Protein Coding RNA 2412 2 3 5
  • LINC02412 2 170
  • NONHSAG011914 94

External Ids for LINC02412 Gene

Summaries for LINC02412 Gene

GeneCards Summary for LINC02412 Gene

LINC02412 (Long Intergenic Non-Protein Coding RNA 2412) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02412 include Lung Cancer.

Additional gene information for LINC02412 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02412 Gene

Genomics for LINC02412 Gene

GeneHancer (GH) Regulatory Elements for LINC02412 Gene

Promoters and enhancers for LINC02412 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J093375 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.6 +206.0 206031 8.2 SIN3A ZNF24 CTCF ZBTB6 RBPJ SMARCE1 POLR2A ATF1 CREB1 ZNF362 ENSG00000257252 NUDT4 LOC643339 ENSG00000257512 UBE2N LINC02412 MRPL42 piR-38893-003
GH12J093121 Enhancer 1.1 Ensembl ENCODE dbSUPER 6.7 -51.6 -51570 4.2 CREB1 MIXL1 HLF RAD21 ZNF121 ELF3 SP1 CEBPG HNF1A ZNF384 LINC02412 NUDT4 lnc-NUDT4-9 NACAP8 ENSG00000257322 LOC643339
GH12J094135 Enhancer 0.8 Ensembl ENCODE 4.9 +961.5 961521 2.8 CTCF ZNF362 RAD21 ZNF384 REST TRIM22 PKNOX1 MNT ZBTB20 SCRT2 LINC02412 LOC441644 RF00017-1206
GH12J093387 Enhancer 0.7 ENCODE dbSUPER 4.6 +214.4 214433 1.3 ZBED1 ZNF316 EED BCL11A RUNX3 FOS JUNB FOSL1 BATF VEZF1 LINC02412 NUDT4 piR-38893-003
GH12J094140 Enhancer 0.4 Ensembl 4.8 +968.2 968230 1.4 CTCF CTBP1 ZFHX2 ENSG00000257360 LOC441644 LINC02412 PLXNC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02412 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02412 Gene

Genomic Locations for LINC02412 Gene
chr12:93,173,470-93,182,299
(GRCh38/hg38)
Size:
8,830 bases
Orientation:
Plus strand
chr12:93,568,142-93,575,608
(GRCh37/hg19)
Size:
7,467 bases
Orientation:
Plus strand

Genomic View for LINC02412 Gene

Genes around LINC02412 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02412 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02412 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02412 Gene

Proteins for LINC02412 Gene

Post-translational modifications for LINC02412 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02412 Gene

Domains & Families for LINC02412 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02412 Gene

Function for LINC02412 Gene

Phenotypes From GWAS Catalog for LINC02412 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02412 Gene

Localization for LINC02412 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02412 Gene

Pathways & Interactions for LINC02412 Gene

PathCards logo

SuperPathways for LINC02412 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02412 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02412 Gene

Drugs & Compounds for LINC02412 Gene

No Compound Related Data Available

Transcripts for LINC02412 Gene

mRNA/cDNA for LINC02412 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(2) NONCODE transcripts :
(2) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02412 Gene

No ASD Table

Relevant External Links for LINC02412 Gene

GeneLoc Exon Structure for
LINC02412
ECgene alternative splicing isoforms for
LINC02412

Expression for LINC02412 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02412 Gene

Orthologs for LINC02412 Gene

Evolution for LINC02412 Gene

ENSEMBL:
Gene Tree for LINC02412 (if available)
TreeFam:
Gene Tree for LINC02412 (if available)

No data available for Orthologs for LINC02412 Gene

Paralogs for LINC02412 Gene

No data available for Paralogs for LINC02412 Gene

Variants for LINC02412 Gene

Sequence variations from dbSNP and Humsavar for LINC02412 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000080416 -- 93,177,180(+) C/T intron_variant
rs1000811180 -- 93,175,421(+) G/T intron_variant
rs1000924899 -- 93,172,999(+) G/A upstream_transcript_variant
rs1000939861 -- 93,175,838(+) G/T intron_variant
rs1000975291 -- 93,172,750(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02412 Gene

Variant ID Type Subtype PubMed ID
nsv7234 OTHER inversion 18451855

Additional Variant Information for LINC02412 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02412

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02412 Gene

Disorders for LINC02412 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC02412 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
lung cancer
  • adenocarcinoma of lung
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC02412

genes like me logo Genes that share disorders with LINC02412: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02412 Gene

Publications for LINC02412 Gene

No publications were found for LINC02412 Gene.

No data available for External Links for LINC02412 Gene

Products for LINC02412 Gene

Sources for LINC02412 Gene