Aliases for LINC02411 Gene

Subcategory (RNA class) for LINC02411 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02411 Gene

  • Long Intergenic Non-Protein Coding RNA 2411 2 3 5
  • LINC02411 2 168
  • NONHSAG012713 92
  • HSALNG0095013 167

External Ids for LINC02411 Gene

Summaries for LINC02411 Gene

GeneCards Summary for LINC02411 Gene

LINC02411 (Long Intergenic Non-Protein Coding RNA 2411) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02411 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02411 Gene

Genomics for LINC02411 Gene

GeneHancer (GH) Regulatory Elements for LINC02411 Gene

Promoters and enhancers for LINC02411 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J127641 Enhancer 0.4 ENCODE 0.7 -3.9 -3883 0.2 USF1 NFYB USF2 LINC02411 LOC105370068
GH12J127628 Enhancer 0.5 Ensembl ENCODE 0.4 +7.5 7482 0.9 JUND FOS ENSG00000257035 LOC100420119 lnc-TMEM132C-10 LINC02411
GH12J127640 Enhancer 0.3 ENCODE 0.7 -4.2 -4203 0.2 CEBPB LINC02411 LOC105370068
GH12J127627 Enhancer 0.2 Ensembl 0.4 +9.4 9387 0.2 ENSG00000257035 LOC100420119 lnc-TMEM132C-10 LINC02411
GH12J127644 Enhancer 0.2 Ensembl 0.4 -8.1 -8113 0.8 LINC02411 LOC105370068
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02411 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02411 Gene

Genomic Locations for LINC02411 Gene
chr12:127,631,248-127,636,488
(GRCh38/hg38)
Size:
5,241 bases
Orientation:
Minus strand
chr12:128,115,793-128,121,012
(GRCh37/hg19)
Size:
5,220 bases
Orientation:
Minus strand

Genomic View for LINC02411 Gene

Genes around LINC02411 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02411 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02411 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02411 Gene

Proteins for LINC02411 Gene

Post-translational modifications for LINC02411 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02411 Gene

Domains & Families for LINC02411 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02411 Gene

Function for LINC02411 Gene

Phenotypes From GWAS Catalog for LINC02411 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02411 Gene

Localization for LINC02411 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02411 Gene

Pathways & Interactions for LINC02411 Gene

PathCards logo

SuperPathways for LINC02411 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02411 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02411 Gene

Drugs & Compounds for LINC02411 Gene

No Compound Related Data Available

Transcripts for LINC02411 Gene

mRNA/cDNA for LINC02411 Gene

25 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
14 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
4 LncBook transcripts :
9 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02411 Gene

No ASD Table

Relevant External Links for LINC02411 Gene

GeneLoc Exon Structure for
LINC02411

Expression for LINC02411 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02411 Gene

Orthologs for LINC02411 Gene

Evolution for LINC02411 Gene

ENSEMBL:
Gene Tree for LINC02411 (if available)
TreeFam:
Gene Tree for LINC02411 (if available)

No data available for Orthologs for LINC02411 Gene

Paralogs for LINC02411 Gene

No data available for Paralogs for LINC02411 Gene

Variants for LINC02411 Gene

Additional dbSNP identifiers (rs#s) for LINC02411 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02411 Gene

Variant ID Type Subtype PubMed ID
dgv1573n100 CNV gain 25217958
esv3631117 CNV gain 21293372
nsv560620 CNV gain 21841781

Additional Variant Information for LINC02411 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02411

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02411 Gene

Disorders for LINC02411 Gene

Additional Disease Information for LINC02411

No disorders were found for LINC02411 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02411 Gene

Publications for LINC02411 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

No data available for Mastermind for LINC02411 Gene

Products for LINC02411 Gene

Sources for LINC02411 Gene