LINC02409 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2409

GC12M097271
GIFtS:
6
See more...

Aliases for LINC02409 Gene

Subcategory (RNA class) for LINC02409 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC02409 Gene

  • Long Intergenic Non-Protein Coding RNA 2409 2 3 5
  • LINC02409 2 5 165
  • NONHSAG012013.2 91

External Ids for LINC02409 Gene

Summaries for LINC02409 Gene

GeneCards Summary for LINC02409 Gene

LINC02409 (Long Intergenic Non-Protein Coding RNA 2409) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02409 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02409 Gene

Genomics for LINC02409 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC02409 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J097275 Promoter/Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 600.7 +0.3 294 2.2 GATAD2A SOX13 EZH2 TEAD1 POLR2A SIN3A SMAD4 SMARCA4 SOX5 MLX LINC02409 LOC105369930 NEDD1
GH12J097299 Enhancer 0.6 ENCODE 0.4 -23.7 -23654 0.9 GATAD2A SOX13 CREM FOXP1 SMAD4 BCL6 TFAP4 NFIL3 RARA HMG20A LINC02409 piR-50443-088 NEDD1
GH12J097292 Enhancer 0.5 Ensembl 0.4 -17.0 -16992 2 IKZF2 DPF2 TCF12 ARNT IKZF1 TBX21 MTA2 BHLHE40 SPI1 LINC02409 piR-50443-088 NEDD1
GH12J097308 Enhancer 0.5 ENCODE 0.3 -32.6 -32609 0.2 CTCF REST RAD21 TRIM22 SMARCA5 CTBP1 SMC3 ELF1 piR-50443-088 LINC02409 NEDD1
GH12J097312 Enhancer 0.6 Ensembl ENCODE 0.3 -36.5 -36492 1.8 CTCF NANOG POU5F1 piR-50443-088 LINC02409 NEDD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02409 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02409 Gene

Genomic Locations for LINC02409 Gene
chr12:97,270,099-97,276,209
(GRCh38/hg38)
Size:
6,111 bases
Orientation:
Minus strand
chr12:97,666,470-97,669,987
(GRCh37/hg19)
Size:
3,518 bases
Orientation:
Minus strand

Genomic View for LINC02409 Gene

Genes around LINC02409 on UCSC Golden Path with GeneCards custom track
LINC02409 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02409 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02409 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02409 Gene

Proteins for LINC02409 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02409 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02409 Gene

Domains & Families for LINC02409 Gene

Gene Families for LINC02409 Gene

HGNC:
genes like me logo Genes that share domains with LINC02409: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02409 Gene

Function for LINC02409 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02409 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02409 Gene

Localization for LINC02409 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02409 Gene

Pathways & Interactions for LINC02409 Gene

PathCards logo

SuperPathways for LINC02409 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02409 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02409 Gene

Drugs & Compounds for LINC02409 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02409 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02409 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000B9562_9606 lncRNA 576 4

HGNC: 53338,

Ensembl: ENST00000547515 (view in UCSC) ,

LNCipedia: LINC02409:3,

NONCODE: NONHSAT030087.2,

LINC02409 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02409 Gene

No ASD Table

Relevant External Links for LINC02409 Gene

GeneLoc Exon Structure for
LINC02409

No data available for mRNA/cDNA for LINC02409 Gene

Expression for LINC02409 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02409 Gene

Orthologs for LINC02409 Gene

Evolution for LINC02409 Gene

ENSEMBL:
Gene Tree for LINC02409 (if available)
TreeFam:
Gene Tree for LINC02409 (if available)

No data available for Orthologs for LINC02409 Gene

Paralogs for LINC02409 Gene

No data available for Paralogs for LINC02409 Gene

Variants for LINC02409 Gene

Additional dbSNP identifiers (rs#s) for LINC02409 Gene

Additional Variant Information for LINC02409 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02409

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02409 Gene

Disorders for LINC02409 Gene

No disorders were found for LINC02409 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02409 Gene

Publications for LINC02409 Gene

No publications were found for LINC02409 Gene.

No data available for Mastermind for LINC02409 Gene

Products for LINC02409 Gene

Sources for LINC02409 Gene