Aliases for LINC02407 Gene

Subcategory (RNA class) for LINC02407 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC02407 Gene

  • HSALNG0092542 164
  • LINC02407 165

Previous GeneCards Identifiers for LINC02407 Gene

  • GC12P076261

No data available for External Ids for LINC02407 Gene

Summaries for LINC02407 Gene

GeneCards Summary for LINC02407 Gene

LINC02407 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02407 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02407 Gene

Genomics for LINC02407 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02407 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J076299 Enhancer 0.6 Ensembl ENCODE dbSUPER 600.7 +0.2 169 2.1 CEBPB LINC02407 LNCOG lnc-BBS10-4 BBS10 NAP1L1
GH12J076302 Enhancer 0.9 ENCODE dbSUPER 0.7 +3.6 3596 2.4 RFX1 ZNF740 ZSCAN29 HMBOX1 GABPA MEF2D GTF2A2 RELA ZNF592 STAT1 lnc-BBS10-4 KRR1 RPL21P98 LNCOG CSRP2 LINC02407 BBS10 NAP1L1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02407 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02407 Gene

Genomic Locations for LINC02407 Gene
chr12:76,299,947-76,307,706
(GRCh38/hg38)
Size:
7,760 bases
Orientation:
Plus strand

Genomic View for LINC02407 Gene

Genes around LINC02407 on UCSC Golden Path with GeneCards custom track
LINC02407 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

LINC02407 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02407 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for LINC02407 Gene

Proteins for LINC02407 Gene

Post-translational modifications for LINC02407 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02407 Gene

Domains & Families for LINC02407 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02407 Gene

Function for LINC02407 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02407 Gene

Localization for LINC02407 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02407 Gene

Pathways & Interactions for LINC02407 Gene

PathCards logo

SuperPathways for LINC02407 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02407 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02407 Gene

Drugs & Compounds for LINC02407 Gene

No Compound Related Data Available

Transcripts for LINC02407 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02407 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008C070D_9606 lncRNA 342 2

LncBook: HSALNT0191763,

LNCipedia: LINC02407:31,

LINC02407 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02407 Gene

No ASD Table

Relevant External Links for LINC02407 Gene

GeneLoc Exon Structure for
LINC02407

No data available for mRNA/cDNA for LINC02407 Gene

Expression for LINC02407 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02407

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02407 Gene

Orthologs for LINC02407 Gene

No data available for Orthologs and Evolution for LINC02407 Gene

Paralogs for LINC02407 Gene

No data available for Paralogs for LINC02407 Gene

Variants for LINC02407 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LINC02407 Gene

Disorders for LINC02407 Gene

No disorders were found for LINC02407 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02407 Gene

Publications for LINC02407 Gene

No publications were found for LINC02407 Gene.

No data available for Mastermind for LINC02407 Gene

Products for LINC02407 Gene

Sources for LINC02407 Gene