Aliases for LINC02405 Gene

Subcategory (RNA class) for LINC02405 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC02405 Gene

  • Long Intergenic Non-Protein Coding RNA 2405 2 3 5
  • LINC02405 2 170
  • HSALNG0094974 169
  • NONHSAG012700 94

External Ids for LINC02405 Gene

Summaries for LINC02405 Gene

GeneCards Summary for LINC02405 Gene

LINC02405 (Long Intergenic Non-Protein Coding RNA 2405) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02405 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02405 Gene

Genomics for LINC02405 Gene

GeneHancer (GH) Regulatory Elements for LINC02405 Gene

Promoters and enhancers for LINC02405 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J127060 Promoter/Enhancer 1.2 Ensembl ENCODE 756.7 -1.2 -1236 4 ZBTB40 ELF1 L3MBTL2 ZC3H8 GTF2F1 ZFX SP1 SMARCA4 TRIM24 EGR1 LINC02405 ENSG00000256001 piR-48799-030
GH12J127177 Enhancer 0.6 dbSUPER 5.5 -118.7 -118660 4.4 ZNF148 CBFA2T2 TRIM24 LEF1 NFE2 MAFG TRIM28 NFIC CBX1 CEBPB LINC02405 RF00017-1336 piR-33730-024 ENSG00000286016
GH12J127189 Enhancer 0.5 Ensembl dbSUPER 5.7 -130.7 -130736 0.6 CEBPB ATF2 LINC02405 RF00017-1336 piR-33730-024 ENSG00000286016
GH12J127186 Enhancer 0.2 dbSUPER 5.2 -126.3 -126310 1.4 LINC02405 RF00017-1336 piR-33730-024 ENSG00000286016
GH12J127082 Promoter/Enhancer 1.3 FANTOM5 ENCODE CraniofacialAtlas 0.3 -22.9 -22915 2 ZBTB40 SMARCE1 POLR2A SP1 MAFK BACH1 SMARCA4 KAT8 GMEB1 DPF2 piR-48799-030 LINC02405
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02405 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02405 Gene

Genomic Locations for LINC02405 Gene
chr12:126,915,199-127,060,565
(GRCh38/hg38)
Size:
145,367 bases
Orientation:
Minus strand
chr12:127,399,766-127,544,946
(GRCh37/hg19)
Size:
145,181 bases
Orientation:
Minus strand

Genomic View for LINC02405 Gene

Genes around LINC02405 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02405 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02405 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02405 Gene

Proteins for LINC02405 Gene

Post-translational modifications for LINC02405 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02405 Gene

Domains & Families for LINC02405 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02405 Gene

Function for LINC02405 Gene

Phenotypes From GWAS Catalog for LINC02405 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02405 Gene

Localization for LINC02405 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02405 Gene

Pathways & Interactions for LINC02405 Gene

PathCards logo

SuperPathways for LINC02405 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02405 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02405 Gene

Drugs & Compounds for LINC02405 Gene

No Compound Related Data Available

Transcripts for LINC02405 Gene

mRNA/cDNA for LINC02405 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(14) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(19) RNACentral transcripts :
(15) LNCipedia transcripts :
(5) NONCODE transcripts :
(5) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02405 Gene

No ASD Table

Relevant External Links for LINC02405 Gene

GeneLoc Exon Structure for
LINC02405
ECgene alternative splicing isoforms for
LINC02405

Expression for LINC02405 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02405 Gene

Orthologs for LINC02405 Gene

Evolution for LINC02405 Gene

ENSEMBL:
Gene Tree for LINC02405 (if available)
TreeFam:
Gene Tree for LINC02405 (if available)

No data available for Orthologs for LINC02405 Gene

Paralogs for LINC02405 Gene

No data available for Paralogs for LINC02405 Gene

Variants for LINC02405 Gene

Sequence variations from dbSNP and Humsavar for LINC02405 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000017425 -- 127,056,554(-) T/C intron_variant
rs1000031990 -- 126,986,628(-) A/G intron_variant
rs1000034942 -- 126,963,864(-) A/G intron_variant
rs1000036862 -- 126,942,152(-) A/G intron_variant
rs1000037367 -- 127,004,384(-) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02405 Gene

Variant ID Type Subtype PubMed ID
dgv102n21 CNV loss 19592680
dgv1573n100 CNV gain 25217958
dgv2952n54 CNV loss 21841781
dgv2953n54 CNV loss 21841781
dgv895n106 CNV deletion 24896259
esv1473064 CNV deletion 17803354
esv2422157 CNV deletion 20811451
esv2472858 CNV insertion 19546169
esv2659538 CNV deletion 23128226
esv2667448 CNV deletion 23128226
esv2672535 CNV deletion 23128226
esv2677521 CNV deletion 23128226
esv2746607 CNV deletion 23290073
esv2746609 CNV deletion 23290073
esv2760242 CNV loss 21179565
esv2865 CNV loss 18987735
esv28763 CNV loss 19812545
esv3549968 CNV deletion 23714750
esv3631091 CNV loss 21293372
esv3631092 CNV loss 21293372
esv3631093 CNV loss 21293372
esv3631094 CNV loss 21293372
esv3631095 CNV gain 21293372
esv3631096 CNV loss 21293372
esv3631097 CNV loss 21293372
esv3631100 CNV loss 21293372
esv3892273 CNV loss 25118596
esv8664 CNV gain 19470904
nsv1040369 CNV loss 25217958
nsv1043188 CNV gain 25217958
nsv455745 CNV loss 19166990
nsv455746 CNV loss 19166990
nsv455747 CNV loss 19166990
nsv470324 CNV loss 18288195
nsv515981 CNV loss 19592680
nsv517707 CNV loss 19592680
nsv521215 CNV loss 19592680
nsv522129 CNV loss 19592680
nsv560620 CNV gain 21841781
nsv560623 CNV loss 21841781
nsv560624 CNV loss 21841781
nsv560625 CNV loss 21841781
nsv560633 CNV loss 21841781
nsv832542 CNV gain+loss 17160897
nsv832543 CNV gain 17160897
nsv832544 CNV loss 17160897
nsv9007 CNV loss 18304495
nsv957276 CNV deletion 24416366
nsv983494 CNV deletion 23825009

Additional Variant Information for LINC02405 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02405

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02405 Gene

Disorders for LINC02405 Gene

Additional Disease Information for LINC02405

No disorders were found for LINC02405 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02405 Gene

Publications for LINC02405 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LINC02405 Gene

Products for LINC02405 Gene

Sources for LINC02405 Gene