Aliases for LINC02404 Gene

Subcategory (RNA class) for LINC02404 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC02404 Gene

  • Long Intergenic Non-Protein Coding RNA 2404 2 3 5
  • LINC02404 2 170
  • HSALNG0093027 169
  • NONHSAG011891 94

External Ids for LINC02404 Gene

Summaries for LINC02404 Gene

GeneCards Summary for LINC02404 Gene

LINC02404 (Long Intergenic Non-Protein Coding RNA 2404) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02404 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02404 Gene

Genomics for LINC02404 Gene

GeneHancer (GH) Regulatory Elements for LINC02404 Gene

Promoters and enhancers for LINC02404 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J091873 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 750.6 +1.0 1013 5.2 MYC MAX SP1 MLLT1 ZNF687 IKZF1 TRIM22 IKZF2 ZNF143 PKNOX1 LINC02404 piR-31292-034 BTG1 ENSG00000257863
GH12J092069 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 14.9 +199.9 199897 15.2 SIN3A ZBTB6 FOXA1 MLX RBPJ SMARCE1 TCF7L2 CTBP1 NR2F6 ATF1 LINC02404 BTG1 LOC100287544 lnc-BTG1-3 lnc-C12orf74-11 LINC01619
GH12J091885 Enhancer 0.8 Ensembl ENCODE 0.4 +11.0 11034 1.3 GATA3 TCF7L2 ZNF217 NCOA3 FOSL2 CREB1 CTBP1 CEBPB JUN JUND LINC02404 ENSG00000257863
GH12J091879 Enhancer 0.3 ENCODE dbSUPER 0.6 +4.3 4303 0.9 LINC02404 ENSG00000257863
GH12J091878 Enhancer 0.3 ENCODE dbSUPER 0.6 +3.7 3734 0.1 LINC02404 ENSG00000257863
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02404 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02404 Gene

Genomic Locations for LINC02404 Gene
chr12:91,875,303-91,880,659
(GRCh38/hg38)
Size:
5,357 bases
Orientation:
Plus strand
chr12:92,271,167-92,274,431
(GRCh37/hg19)
Size:
3,265 bases
Orientation:
Plus strand

Genomic View for LINC02404 Gene

Genes around LINC02404 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02404 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02404 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02404 Gene

Proteins for LINC02404 Gene

Post-translational modifications for LINC02404 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02404 Gene

Domains & Families for LINC02404 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02404 Gene

Function for LINC02404 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02404 Gene

Localization for LINC02404 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02404 Gene

Pathways & Interactions for LINC02404 Gene

PathCards logo

SuperPathways for LINC02404 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02404 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02404 Gene

Drugs & Compounds for LINC02404 Gene

No Compound Related Data Available

Transcripts for LINC02404 Gene

mRNA/cDNA for LINC02404 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(2) NONCODE transcripts :
(2) LNCipedia transcripts :
(2) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02404 Gene

No ASD Table

Relevant External Links for LINC02404 Gene

GeneLoc Exon Structure for
LINC02404
ECgene alternative splicing isoforms for
LINC02404

Expression for LINC02404 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02404 Gene

Orthologs for LINC02404 Gene

Evolution for LINC02404 Gene

ENSEMBL:
Gene Tree for LINC02404 (if available)
TreeFam:
Gene Tree for LINC02404 (if available)

No data available for Orthologs for LINC02404 Gene

Paralogs for LINC02404 Gene

No data available for Paralogs for LINC02404 Gene

Variants for LINC02404 Gene

Sequence variations from dbSNP and Humsavar for LINC02404 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000015326 -- 91,875,450(+) C/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000044613 -- 91,876,921(+) G/T intron_variant, non_coding_transcript_variant
rs1000096536 -- 91,877,181(+) C/T intron_variant, non_coding_transcript_variant
rs1001228499 -- 91,875,871(+) C/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1002038708 -- 91,874,322(+) T/C upstream_transcript_variant

Additional Variant Information for LINC02404 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02404

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02404 Gene

Disorders for LINC02404 Gene

No disorders were found for LINC02404 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02404 Gene

Publications for LINC02404 Gene

No publications were found for LINC02404 Gene.

No data available for External Links for LINC02404 Gene

Products for LINC02404 Gene

Sources for LINC02404 Gene