Aliases for LINC02403 Gene

Subcategory (RNA class) for LINC02403 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC02403 Gene

  • Long Intergenic Non-Protein Coding RNA 2403 2 3 5
  • LINC02403 2 5 165
  • NONHSAG011466.2 91

External Ids for LINC02403 Gene

Summaries for LINC02403 Gene

GeneCards Summary for LINC02403 Gene

LINC02403 (Long Intergenic Non-Protein Coding RNA 2403) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02403 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02403 Gene

Genomics for LINC02403 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02403 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J058087 Enhancer 0.4 Ensembl 600.7 +0.0 9 1.4 USF1 PRDM10 RAD51 USF2 LINC02403 lnc-CTDSP2-3 LOC105369784 ATP23 LRIG3
GH12J058067 Enhancer 0.9 Ensembl ENCODE 0.4 -19.1 -19092 3.2 CREB1 TARDBP ZHX2 FOXA1 ATF7 CTBP1 CEBPB FOS JUN RCOR1 ATP23 MN309174-115 LINC02403 LRIG3
GH12J058081 Enhancer 0.3 Ensembl 0.4 -6.4 -6391 0.2 CEBPB LINC02403 lnc-CTDSP2-3 MN309174-115 LOC105369784 ATP23 LRIG3
GH12J058066 Enhancer 0.2 Ensembl 0.4 -21.6 -21591 0.2 NXPH4 MN309174-115 LINC02403 ATP23 LRIG3
GH12J058068 Enhancer 0.2 Ensembl 0.4 -21.1 -21091 0.4 MN309174-115 LINC02403 ATP23 LRIG3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02403 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02403 Gene

Genomic Locations for LINC02403 Gene
chr12:58,087,892-58,093,362
(GRCh38/hg38)
Size:
5,471 bases
Orientation:
Plus strand
chr12:58,481,675-58,487,145
(GRCh37/hg19)
Size:
5,471 bases
Orientation:
Plus strand

Genomic View for LINC02403 Gene

Genes around LINC02403 on UCSC Golden Path with GeneCards custom track
LINC02403 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02403 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02403 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02403 Gene

Proteins for LINC02403 Gene

Post-translational modifications for LINC02403 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02403 Gene

Domains & Families for LINC02403 Gene

Gene Families for LINC02403 Gene

genes like me logo Genes that share domains with LINC02403: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02403 Gene

Function for LINC02403 Gene

Phenotypes From GWAS Catalog for LINC02403 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02403 Gene

Localization for LINC02403 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02403 Gene

Pathways & Interactions for LINC02403 Gene

PathCards logo

SuperPathways for LINC02403 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02403 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02403 Gene

Drugs & Compounds for LINC02403 Gene

No Compound Related Data Available

Transcripts for LINC02403 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02403 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000769D62_9606 lncRNA 484 5

HGNC: 53330,

RefSeq: NR_135022,

Ensembl: ENST00000548215 (view in UCSC) ,

LNCipedia: LINC02403:3,

NONCODE: NONHSAT029016.2,

LINC02403 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02403 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02403 Gene

No ASD Table

Relevant External Links for LINC02403 Gene

GeneLoc Exon Structure for
LINC02403

Expression for LINC02403 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02403 Gene

Orthologs for LINC02403 Gene

Evolution for LINC02403 Gene

ENSEMBL:
Gene Tree for LINC02403 (if available)
TreeFam:
Gene Tree for LINC02403 (if available)

No data available for Orthologs for LINC02403 Gene

Paralogs for LINC02403 Gene

No data available for Paralogs for LINC02403 Gene

Variants for LINC02403 Gene

Additional dbSNP identifiers (rs#s) for LINC02403 Gene

Additional Variant Information for LINC02403 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02403

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02403 Gene

Disorders for LINC02403 Gene

Additional Disease Information for LINC02403

No disorders were found for LINC02403 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02403 Gene

Publications for LINC02403 Gene

No publications were found for LINC02403 Gene.

No data available for Mastermind for LINC02403 Gene

Products for LINC02403 Gene

Sources for LINC02403 Gene