Aliases for LINC02399 Gene

Data sources for LINC02399 Gene:

Subcategory (RNA class) for LINC02399 Gene

lncRNA

Aliases for LINC02399 Gene

External Ids for LINC02399 Gene

Summaries for LINC02399 Gene

GeneCards Summary for LINC02399 Gene

LINC02399 (Long Intergenic Non-Protein Coding RNA 2399) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02399 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02399 Gene

Genomics for LINC02399 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02399 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J089942 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 250.7 -0.2 -234 9.7 ZBTB10 BCL11A FEZF1 DEK ZNF217 CTCF BRCA1 ZEB1 ZIC2 ZNF610 LINC02399 ATP2B1 ENSG00000258302 POC1B ATP2B1-AS1 HSALNG0092966 LOC105369890 ENSG00000258216
GH12J089926 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -19.2 -19156 4.1 SP1 BCL11A IRF4 TRIM22 GABPA SPI1 BHLHE40 ATF1 ASH2L BATF ATP2B1 POC1B LOC105369890 LINC02399 HSALNG0092966 ENSG00000258216
GH12J089932 Enhancer 0.8 Ensembl dbSUPER 0.4 -12.7 -12692 4.4 FEZF1 IRF4 EBF1 BATF FOXA1 ZNF24 ELF1 IKZF1 JUNB PKNOX1 ATP2B1-AS1 LINC02399 LOC105369890 HSALNG0092966 ATP2B1 ENSG00000258216
GH12J089939 Enhancer 0.5 Ensembl ENCODE dbSUPER 0.4 -8.1 -8066 1.3 LINC02399 LOC105369890 HSALNG0092966 ENSG00000258216 ATP2B1
GH12J089924 Enhancer 0.5 FANTOM5 dbSUPER 0.3 -23.4 -23407 0.5 ZNF664 ATP2B1 POC1B LOC105369890 LINC02399 HSALNG0092966 ENSG00000258216
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02399 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02399 Gene

Latest Assembly
chr12:89,947,692-89,949,793
(GRCh38/hg38)
Size:
2,102 bases
Orientation:
Plus strand

Previous Assembly
chr12:90,341,470-90,343,503
(GRCh37/hg19 by Entrez Gene)
Size:
2,034 bases
Orientation:
Plus strand

chr12:90,341,470-90,343,503
(GRCh37/hg19 by Ensembl)
Size:
2,034 bases
Orientation:
Plus strand

Genomic View for LINC02399 Gene

Genes around LINC02399 on UCSC Golden Path with GeneCards custom track
LINC02399 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02399 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02399 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02399 Gene

Proteins for LINC02399 Gene

Post-translational modifications for LINC02399 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02399 Gene

Domains & Families for LINC02399 Gene

Gene Families for LINC02399 Gene

genes like me logo Genes that share domains with LINC02399: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02399 Gene

Function for LINC02399 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02399 Gene

Localization for LINC02399 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02399 Gene

Pathways & Interactions for LINC02399 Gene

PathCards logo

SuperPathways for LINC02399 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02399 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02399 Gene

Drugs & Compounds for LINC02399 Gene

No Compound Related Data Available

Transcripts for LINC02399 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02399 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001F6D12_9606 lncRNA 400 4

Ensembl: ENST00000547094 (view in UCSC) ,

LncBook: HSALNT0192740,

LNCipedia: LINC02399:4,

NONCODE: NONHSAT029834.2,

URS0000A775BE_9606 lncRNA 400 1

RefSeq: NR_135019,

URS00008BB9B5_9606 lncRNA 379 3

LncBook: HSALNT0192741,

LNCipedia: LINC02399:5,

NONCODE: NONHSAT029835.2,

URS00009B00D0_9606 lncRNA 377 2

LncBook: HSALNT0192742,

NONCODE: NONHSAT162539.1,

LINC02399 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02399 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02399 Gene

No ASD Table

Relevant External Links for LINC02399 Gene

GeneLoc Exon Structure for
LINC02399

Expression for LINC02399 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02399 Gene

Orthologs for LINC02399 Gene

Evolution for LINC02399 Gene

ENSEMBL:
Gene Tree for LINC02399 (if available)
TreeFam:
Gene Tree for LINC02399 (if available)

No data available for Orthologs for LINC02399 Gene

Paralogs for LINC02399 Gene

No data available for Paralogs for LINC02399 Gene

Variants for LINC02399 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02399 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02399 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02399

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02399 Gene

Disorders for LINC02399 Gene

Additional Disease Information for LINC02399

No disorders were found for LINC02399 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02399 Gene

Publications for LINC02399 Gene

No publications were found for LINC02399 Gene.

No data available for Mastermind for LINC02399 Gene

Products for LINC02399 Gene

Sources for LINC02399 Gene