Aliases for LINC02398 Gene

Subcategory (RNA class) for LINC02398 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02398 Gene

  • Long Intergenic Non-Protein Coding RNA 2398 2 3 5
  • LINC02398 2 5 165
  • NONHSAG010639.2 91
  • HSALNG0089710 164

External Ids for LINC02398 Gene

Summaries for LINC02398 Gene

GeneCards Summary for LINC02398 Gene

LINC02398 (Long Intergenic Non-Protein Coding RNA 2398) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02398 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02398 Gene

Genomics for LINC02398 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02398 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J020013 Enhancer 0.2 Ensembl 608.2 -1.0 -984 1.4 LINC02398 lnc-PLCZ1-5 PDE3A AEBP2
GH12J020015 Enhancer 0.2 Ensembl 607.9 +0.4 416 0.2 LINC02398 piR-31534-119 PDE3A AEBP2
GH12J019997 Enhancer 1 Ensembl ENCODE dbSUPER 8.3 -15.4 -15427 3.9 POLR2A SP1 BRCA1 CEBPB CHD2 JUN YY1 JUND EP300 FOSL2 lnc-PLCZ1-5 RPL7P6 AEBP2 LINC02398 lnc-PLCZ1-1 ENSG00000255910 PDE3A
GH12J019743 Enhancer 1 Ensembl ENCODE dbSUPER 6.2 -269.2 -269249 4.1 SP1 CEBPB BRCA1 ESR1 FOS FOXA2 CHD2 JUN GTF2F1 JUND RNU1-146P LINC02398 PLEKHA5 HSALNG0089711 ENSG00000255910 AEBP2 PDE3A
GH12J019990 Enhancer 0.9 Ensembl ENCODE dbSUPER 5.7 -22.6 -22572 2.5 CEBPB GTF2F1 MAX DEK MXI1 EP300 SMC3 STAT1 STAT3 TBP LINC02398 lnc-PLCZ1-5 lnc-PLCZ1-1 ENSG00000255910 PDE3A AEBP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02398 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02398 Gene

Genomic Locations for LINC02398 Gene
chr12:20,014,685-20,100,498
(GRCh38/hg38)
Size:
85,814 bases
Orientation:
Plus strand
chr12:20,167,619-20,251,802
(GRCh37/hg19)
Size:
84,184 bases
Orientation:
Plus strand

Genomic View for LINC02398 Gene

Genes around LINC02398 on UCSC Golden Path with GeneCards custom track
LINC02398 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02398 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02398 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02398 Gene

Proteins for LINC02398 Gene

Post-translational modifications for LINC02398 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02398 Gene

Domains & Families for LINC02398 Gene

Gene Families for LINC02398 Gene

genes like me logo Genes that share domains with LINC02398: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02398 Gene

Function for LINC02398 Gene

Phenotypes From GWAS Catalog for LINC02398 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02398 Gene

Localization for LINC02398 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02398 Gene

Pathways & Interactions for LINC02398 Gene

PathCards logo

SuperPathways for LINC02398 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02398 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02398 Gene

Drugs & Compounds for LINC02398 Gene

No Compound Related Data Available

Transcripts for LINC02398 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02398 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DC09_9606 lncRNA 526 4

HGNC: 53325,

RefSeq: NR_040098,

LNCipedia: LINC02398:23,

NONCODE: NONHSAT027220.2,

URS000060535F_9606 lncRNA 431 3

Ensembl: ENST00000536666 (view in UCSC) ,

LncBook: HSALNT0186340,

LNCipedia: LINC02398:24,

URS00008B2296_9606 lncRNA 794 3

LncBook: HSALNT0186344,

LNCipedia: LINC02398:25,

NONCODE: NONHSAT027221.2,

URS0000D57F48_9606 lncRNA 1089 2

LncBook: HSALNT0186326,

LNCipedia: LINC02398:16,

URS00009AE201_9606 lncRNA 431 2

LncBook: HSALNT0186341,

NONCODE: NONHSAT161936.1,

LINC02398 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02398 Gene

No ASD Table

Relevant External Links for LINC02398 Gene

GeneLoc Exon Structure for
LINC02398

No data available for mRNA/cDNA for LINC02398 Gene

Expression for LINC02398 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02398

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02398 Gene

Orthologs for LINC02398 Gene

Evolution for LINC02398 Gene

ENSEMBL:
Gene Tree for LINC02398 (if available)
TreeFam:
Gene Tree for LINC02398 (if available)

No data available for Orthologs for LINC02398 Gene

Paralogs for LINC02398 Gene

No data available for Paralogs for LINC02398 Gene

Variants for LINC02398 Gene

Additional dbSNP identifiers (rs#s) for LINC02398 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02398 Gene

Variant ID Type Subtype PubMed ID
esv2320320 CNV deletion 18987734
esv2657690 CNV deletion 23128226
esv28305 CNV gain 19812545
esv3628778 CNV loss 21293372
nsv1129533 CNV tandem duplication 24896259
nsv1134206 CNV deletion 24896259
nsv1138112 CNV deletion 24896259
nsv557699 CNV loss 21841781
nsv832347 CNV loss 17160897

Additional Variant Information for LINC02398 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02398

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02398 Gene

Disorders for LINC02398 Gene

Additional Disease Information for LINC02398

No disorders were found for LINC02398 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02398 Gene

Publications for LINC02398 Gene

  1. A genome-wide association study identifies susceptibility loci for ossification of the posterior longitudinal ligament of the spine. (PMID: 25064007) Nakajima M … Ikegawa S (Nature genetics 2014) 3
  2. Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data. (PMID: 19584346) Vasan RS … Blankenberg S (JAMA 2009) 3

Products for LINC02398 Gene

Sources for LINC02398 Gene