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Aliases for LINC02398 Gene
Subcategory (RNA class) for LINC02398 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LINC02398 Gene
External Ids for LINC02398 Gene
- HGNC: 53325
- Entrez Gene: 100506393
- Ensembl: ENSG00000256287
Summaries for LINC02398 Gene
GeneCards Summary for LINC02398 Gene
LINC02398 (Long Intergenic Non-Protein Coding RNA 2398) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC02398 Gene
- Monarch Initiative
- Search for LINC02398 at DataMed
- Search for LINC02398 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02398 Gene
Genomics for LINC02398 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC02398 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J020013 | Enhancer | 0.2 | Ensembl | 608.2 | -1.0 | -984 | 1.4 | LINC02398 lnc-PLCZ1-5 PDE3A AEBP2 | ||
| GH12J020015 | Enhancer | 0.2 | Ensembl | 607.9 | +0.4 | 416 | 0.2 | LINC02398 piR-31534-119 PDE3A AEBP2 | ||
| GH12J019997 | Enhancer | 1 | Ensembl ENCODE dbSUPER | 8.3 | -15.4 | -15427 | 3.9 | POLR2A SP1 BRCA1 CEBPB CHD2 JUN YY1 JUND EP300 FOSL2 | lnc-PLCZ1-5 RPL7P6 AEBP2 LINC02398 lnc-PLCZ1-1 ENSG00000255910 PDE3A | |
| GH12J019743 | Enhancer | 1 | Ensembl ENCODE dbSUPER | 6.2 | -269.2 | -269249 | 4.1 | SP1 CEBPB BRCA1 ESR1 FOS FOXA2 CHD2 JUN GTF2F1 JUND | RNU1-146P LINC02398 PLEKHA5 HSALNG0089711 ENSG00000255910 AEBP2 PDE3A | |
| GH12J019990 | Enhancer | 0.9 | Ensembl ENCODE dbSUPER | 5.7 | -22.6 | -22572 | 2.5 | CEBPB GTF2F1 MAX DEK MXI1 EP300 SMC3 STAT1 STAT3 TBP | LINC02398 lnc-PLCZ1-5 lnc-PLCZ1-1 ENSG00000255910 PDE3A AEBP2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02398 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC02398 Gene
Genomic Locations for LINC02398 Gene
- chr12:20,014,685-20,100,498
- (GRCh38/hg38)
- Size:
- 85,814 bases
- Orientation:
- Plus strand
- chr12:20,167,619-20,251,802
- (GRCh37/hg19)
- Size:
- 84,184 bases
- Orientation:
- Plus strand
Genomic View for LINC02398 Gene
Genes around LINC02398 on UCSC Golden Path with GeneCards custom track
LINC02398 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 12p12.2 by HGNC
- 12p12.2 by Entrez Gene
- 12p12.2 by Ensembl
LINC02398 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC02398 Gene
Proteins for LINC02398 Gene
Post-translational modifications for LINC02398 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02398
- Origene Custom Protein Services for LINC02398
No data available for DME Specific Peptides for LINC02398 Gene
Domains & Families for LINC02398 Gene
Gene Families for LINC02398 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02398 Gene
Function for LINC02398 Gene
Phenotypes From GWAS Catalog for LINC02398 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LINC02398
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02398 Gene
Localization for LINC02398 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02398 Gene
Transcripts for LINC02398 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02398 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075DC09_9606 | lncRNA | 526 | 4 |
HGNC: 53325, RefSeq: NR_040098, LNCipedia: LINC02398:23, NONCODE: NONHSAT027220.2, |
| URS000060535F_9606 | lncRNA | 431 | 3 |
Ensembl: ENST00000536666 (view in UCSC) , LncBook: HSALNT0186340, LNCipedia: LINC02398:24, |
| URS00008B2296_9606 | lncRNA | 794 | 3 |
LncBook: HSALNT0186344, LNCipedia: LINC02398:25, NONCODE: NONHSAT027221.2, |
| URS0000D57F48_9606 | lncRNA | 1089 | 2 |
LncBook: HSALNT0186326, LNCipedia: LINC02398:16, |
| URS00009AE201_9606 | lncRNA | 431 | 2 |
LncBook: HSALNT0186341, NONCODE: NONHSAT161936.1, |
LINC02398 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
CRISPR Products
- Browse CRISPR knockouts for LINC02398
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LINC02398 Gene
- GeneLoc Exon Structure for
- LINC02398
No data available for mRNA/cDNA for LINC02398 Gene
Expression for LINC02398 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02398
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02398 Gene
Orthologs for LINC02398 Gene
No data available for Orthologs for LINC02398 Gene
Paralogs for LINC02398 Gene
No data available for Paralogs for LINC02398 Gene
Variants for LINC02398 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2320320 | CNV | deletion | 18987734 |
| esv2657690 | CNV | deletion | 23128226 |
| esv28305 | CNV | gain | 19812545 |
| esv3628778 | CNV | loss | 21293372 |
| nsv1129533 | CNV | tandem duplication | 24896259 |
| nsv1134206 | CNV | deletion | 24896259 |
| nsv1138112 | CNV | deletion | 24896259 |
| nsv557699 | CNV | loss | 21841781 |
| nsv832347 | CNV | loss | 17160897 |
Additional Variant Information for LINC02398 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC02398
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02398 Gene
Disorders for LINC02398 Gene
Additional Disease Information for LINC02398
No disorders were found for LINC02398 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02398 Gene
Publications for LINC02398 Gene
- A genome-wide association study identifies susceptibility loci for ossification of the posterior longitudinal ligament of the spine. (PMID: 25064007) Nakajima M … Ikegawa S (Nature genetics 2014) 3
- Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data. (PMID: 19584346) Vasan RS … Blankenberg S (JAMA 2009) 3
Products for LINC02398 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02398
- Origene Custom Protein Services for LINC02398
- Browse OriGene Inhibitory RNA Products For LINC02398
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC02398
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02398
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC02398
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC02398
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02398
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC02398
Sources for LINC02398 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB