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Aliases for LINC02398 Gene

Subcategory (RNA class) for LINC02398 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02398 Gene

  • Long Intergenic Non-Protein Coding RNA 2398 2 3 5

External Ids for LINC02398 Gene

Summaries for LINC02398 Gene

GeneCards Summary for LINC02398 Gene

LINC02398 (Long Intergenic Non-Protein Coding RNA 2398) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02398 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02398 Gene

Genomics for LINC02398 Gene

GeneHancer (GH) Regulatory Elements for LINC02398 Gene

Promoters and enhancers for LINC02398 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J020013 Enhancer 0.2 Ensembl 608.1 -1.0 -984 1.4 LINC02398 TCP1P3
GH12J020015 Enhancer 0.2 Ensembl 607.9 +0.4 416 0.2 LINC02398 GC12M020025
GH12J019997 Enhancer 1.1 Ensembl ENCODE dbSUPER 8.3 -15.4 -15427 3.9 SP1 POLR2A BRCA1 CEBPB CHD2 JUN JUND EP300 YY1 RFX5 RPL7P6 AEBP2 LINC02398 TCP1P3 ENSG00000255910
GH12J019743 Enhancer 1.1 Ensembl ENCODE dbSUPER 6.2 -269.2 -269249 4.1 BRCA1 CEBPB CHD2 JUN SP1 JUND FOXA2 FOS EP300 RAD21 RNU1-146P LINC02398 PLEKHA5 ENSG00000255910
GH12J019990 Enhancer 1 Ensembl ENCODE dbSUPER 5.7 -22.6 -22572 2.5 MAFK CEBPB MAX MXI1 DEK EP300 SMC3 STAT1 STAT3 TCF7L2 LINC02398 TCP1P3 ENSG00000255910
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02398 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02398 Gene

Genomic Locations for LINC02398 Gene
chr12:20,014,685-20,098,868
(GRCh38/hg38)
Size:
84,184 bases
Orientation:
Plus strand
chr12:20,167,619-20,251,802
(GRCh37/hg19)
Size:
84,184 bases
Orientation:
Plus strand

Genomic View for LINC02398 Gene

Genes around LINC02398 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02398 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02398 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02398 Gene

Proteins for LINC02398 Gene

Post-translational modifications for LINC02398 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02398 Gene

Domains & Families for LINC02398 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02398 Gene

Function for LINC02398 Gene

Phenotypes From GWAS Catalog for LINC02398 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02398 Gene

Localization for LINC02398 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02398 Gene

Pathways & Interactions for LINC02398 Gene

PathCards logo

SuperPathways for LINC02398 Gene

No Data Available

Interacting Proteins for LINC02398 Gene

Gene Ontology (GO) - Biological Process for LINC02398 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02398 Gene

Drugs & Compounds for LINC02398 Gene

No Compound Related Data Available

Transcripts for LINC02398 Gene

mRNA/cDNA for LINC02398 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02398 Gene

No ASD Table

Relevant External Links for LINC02398 Gene

GeneLoc Exon Structure for
LINC02398
ECgene alternative splicing isoforms for
LINC02398

Expression for LINC02398 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02398 Gene

Orthologs for LINC02398 Gene

Evolution for LINC02398 Gene

ENSEMBL:
Gene Tree for LINC02398 (if available)
TreeFam:
Gene Tree for LINC02398 (if available)

No data available for Orthologs for LINC02398 Gene

Paralogs for LINC02398 Gene

No data available for Paralogs for LINC02398 Gene

Variants for LINC02398 Gene

Sequence variations from dbSNP and Humsavar for LINC02398 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000024587 -- 20,056,149(+) G/A intron_variant
rs1000028677 -- 20,093,571(+) C/A/T intron_variant
rs1000060069 -- 20,080,138(+) A/G intron_variant
rs1000062602 -- 20,020,706(+) T/A intron_variant
rs1000068015 -- 20,099,145(+) A/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02398 Gene

Variant ID Type Subtype PubMed ID
esv2320320 CNV deletion 18987734
esv2657690 CNV deletion 23128226
esv28305 CNV gain 19812545
esv3628778 CNV loss 21293372
nsv1129533 CNV tandem duplication 24896259
nsv1134206 CNV deletion 24896259
nsv1138112 CNV deletion 24896259
nsv557699 CNV loss 21841781
nsv832347 CNV loss 17160897

Additional Variant Information for LINC02398 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02398

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02398 Gene

Disorders for LINC02398 Gene

Additional Disease Information for LINC02398

No disorders were found for LINC02398 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02398 Gene

Publications for LINC02398 Gene

  1. A genome-wide association study identifies susceptibility loci for ossification of the posterior longitudinal ligament of the spine. (PMID: 25064007) Nakajima M … Ikegawa S (Nature genetics 2014) 3 58
  2. Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data. (PMID: 19584346) Vasan RS … Blankenberg S (JAMA 2009) 3 58

Products for LINC02398 Gene

Sources for LINC02398 Gene

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