Aliases for LINC02397 Gene

Subcategory (RNA class) for LINC02397 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC02397 Gene

  • Long Intergenic Non-Protein Coding RNA 2397 2 3 5
  • LINC02397 2 170
  • HSALNG0093062 169

External Ids for LINC02397 Gene

Summaries for LINC02397 Gene

GeneCards Summary for LINC02397 Gene

LINC02397 (Long Intergenic Non-Protein Coding RNA 2397) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02397 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02397 Gene

Genomics for LINC02397 Gene

GeneHancer (GH) Regulatory Elements for LINC02397 Gene

Promoters and enhancers for LINC02397 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J092459 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 756 +0.9 869 14.6 ZNF24 SP1 ZBTB40 SMARCE1 TCF7L2 MYC ETV6 RELA MAX POU5F1 LINC02397 CLLU1OS C12orf74 CLLU1 BTG1 LOC105369904 ENSG00000266923
GH12J092432 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 18.1 -26.3 -26330 19 ZNF24 ETV6 RELA MAX POLR2A MLLT1 ZNF687 CREM TRIM24 ZBED1 CLLU1OS LINC02397 C12orf74 BTG1 ENSG00000257252 EEA1 ENSG00000266923 CLLU1
GH12J092537 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 11.8 +76.7 76722 11.6 ZNF24 SP1 FOXA1 SMARCE1 ZNF217 JUND MYC ETV6 RELA HLF RF01210-084 LINC02397 CLLU1OS BTG1 CLLU1 EEA1 LOC100132126
GH12J092648 Enhancer 1.1 FANTOM5 Ensembl ENCODE 5.7 +183.0 182987 2.4 SIN3A CTCF HLF RAD21 MAFK RXRA REST ATF1 TRIM22 ZNF143 LINC02397 CLLU1OS EEA1 piR-32461-052 piR-35398-007
GH12J092654 Enhancer 0.3 Ensembl ENCODE 7.8 +188.8 188799 1.5 LINC02397 piR-32461-052 piR-35398-007
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02397 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02397 Gene

Genomic Locations for LINC02397 Gene
chr12:92,466,431-92,492,091
(GRCh38/hg38)
Size:
25,661 bases
Orientation:
Plus strand
chr12:92,860,227-92,885,867
(GRCh37/hg19)
Size:
25,641 bases
Orientation:
Plus strand

Genomic View for LINC02397 Gene

Genes around LINC02397 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02397 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02397 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02397 Gene

Proteins for LINC02397 Gene

Post-translational modifications for LINC02397 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02397 Gene

Domains & Families for LINC02397 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02397 Gene

Function for LINC02397 Gene

Phenotypes From GWAS Catalog for LINC02397 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02397 Gene

Localization for LINC02397 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02397 Gene

Pathways & Interactions for LINC02397 Gene

PathCards logo

SuperPathways for LINC02397 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02397 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02397 Gene

Drugs & Compounds for LINC02397 Gene

No Compound Related Data Available

Transcripts for LINC02397 Gene

mRNA/cDNA for LINC02397 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(12) RNACentral transcripts :
(7) LncBook transcripts :
(11) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02397 Gene

No ASD Table

Relevant External Links for LINC02397 Gene

GeneLoc Exon Structure for
LINC02397
ECgene alternative splicing isoforms for
LINC02397

Expression for LINC02397 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02397 Gene

Orthologs for LINC02397 Gene

Evolution for LINC02397 Gene

ENSEMBL:
Gene Tree for LINC02397 (if available)
TreeFam:
Gene Tree for LINC02397 (if available)

No data available for Orthologs for LINC02397 Gene

Paralogs for LINC02397 Gene

No data available for Paralogs for LINC02397 Gene

Variants for LINC02397 Gene

Sequence variations from dbSNP and Humsavar for LINC02397 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000222347 -- 92,483,284(+) T/G non_coding_transcript_variant
rs1000390635 -- 92,471,354(+) G/A intron_variant
rs1000582209 -- 92,473,918(+) T/C intron_variant
rs1000686035 -- 92,476,652(+) C/T intron_variant
rs1000796502 -- 92,474,232(+) A/C intron_variant

Additional Variant Information for LINC02397 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02397

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02397 Gene

Disorders for LINC02397 Gene

Additional Disease Information for LINC02397

No disorders were found for LINC02397 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02397 Gene

Publications for LINC02397 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for LINC02397 Gene

Sources for LINC02397 Gene