Aliases for LINC02396 Gene

Subcategory (RNA class) for LINC02396 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02396 Gene

  • Long Intergenic Non-Protein Coding RNA 2396 2 3 5
  • LINC02396 2 168
  • HSALNG0090983 167
  • NONHSAG011117 92

External Ids for LINC02396 Gene

Summaries for LINC02396 Gene

GeneCards Summary for LINC02396 Gene

LINC02396 (Long Intergenic Non-Protein Coding RNA 2396) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02396 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02396 Gene

Genomics for LINC02396 Gene

GeneHancer (GH) Regulatory Elements for LINC02396 Gene

Promoters and enhancers for LINC02396 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J049909 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +1.7 1691 4 ZNF217 ZIC2 MYC EP300 GATAD2B CTBP1 RBM25 ZNF148 ESRRA DEK LINC02396 FAIM2 LINC02395
GH12J049913 Enhancer 0.8 Ensembl dbSUPER 0.7 -2.0 -2009 1 ZIC2 ZNF423 NFIC ZBTB17 ZNF263 ZKSCAN1 CEBPG CEBPB RBBP5 PBX2 FAIM2 LINC02396 LINC02395 lnc-FAIM2-2
GH12J049920 Enhancer 0.6 Ensembl 0.4 -8.1 -8109 2 CTCF CEBPB FOS GATA2 RAD21 JUN HLF ZNF366 GATA3 POLR2A FAIM2 lnc-FAIM2-2 LINC02396 LINC02395
GH12J049925 Enhancer 0.5 Ensembl 0.4 -14.0 -14009 1.8 ZNF8 NFATC1 BCL3 ZNF184 MNT ZNF121 ZSCAN4 lnc-FAIM2-2 LINC02396 LINC02395
GH12J049905 Enhancer 0.4 dbSUPER 0.4 +5.5 5509 2.8 NRF1 USF2 ZFP36 EBF1 FAIM2 LINC02395 LINC02396
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02396 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02396 Gene

Genomic Locations for LINC02396 Gene
chr12:49,908,882-49,912,292
(GRCh38/hg38)
Size:
3,411 bases
Orientation:
Minus strand
chr12:50,302,665-50,305,646
(GRCh37/hg19)
Size:
2,982 bases
Orientation:
Minus strand

Genomic View for LINC02396 Gene

Genes around LINC02396 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02396 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02396 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02396 Gene

Proteins for LINC02396 Gene

Post-translational modifications for LINC02396 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02396 Gene

Domains & Families for LINC02396 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02396 Gene

Function for LINC02396 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02396 Gene

Localization for LINC02396 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02396 Gene

Pathways & Interactions for LINC02396 Gene

PathCards logo

SuperPathways for LINC02396 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02396 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02396 Gene

Drugs & Compounds for LINC02396 Gene

No Compound Related Data Available

Transcripts for LINC02396 Gene

mRNA/cDNA for LINC02396 Gene

10 RNACentral transcripts :
2 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
3 LncBook transcripts :
9 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02396 Gene

No ASD Table

Relevant External Links for LINC02396 Gene

GeneLoc Exon Structure for
LINC02396

Expression for LINC02396 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02396

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02396 Gene

Orthologs for LINC02396 Gene

Evolution for LINC02396 Gene

ENSEMBL:
Gene Tree for LINC02396 (if available)
TreeFam:
Gene Tree for LINC02396 (if available)

No data available for Orthologs for LINC02396 Gene

Paralogs for LINC02396 Gene

No data available for Paralogs for LINC02396 Gene

Variants for LINC02396 Gene

Additional dbSNP identifiers (rs#s) for LINC02396 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02396 Gene

Variant ID Type Subtype PubMed ID
nsv522972 CNV gain 19592680
nsv525920 CNV loss 19592680
nsv558835 CNV gain 21841781
nsv558836 CNV loss 21841781
nsv832407 CNV loss 17160897

Additional Variant Information for LINC02396 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02396

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02396 Gene

Disorders for LINC02396 Gene

Additional Disease Information for LINC02396

No disorders were found for LINC02396 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02396 Gene

Publications for LINC02396 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LINC02396 Gene

Products for LINC02396 Gene

Sources for LINC02396 Gene