Aliases for LINC02396 Gene

Subcategory (RNA class) for LINC02396 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02396 Gene

  • Long Intergenic Non-Protein Coding RNA 2396 2 3 5
  • LINC02396 2 5 165
  • NONHSAG011117.2 91
  • HSALNG0090983 164

External Ids for LINC02396 Gene

Summaries for LINC02396 Gene

GeneCards Summary for LINC02396 Gene

LINC02396 (Long Intergenic Non-Protein Coding RNA 2396) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02396 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02396 Gene

Genomics for LINC02396 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02396 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J049909 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +1.7 1691 4 CREB1 ZHX2 ZIC2 PKNOX1 PATZ1 ZNF600 ZNF148 KLF9 MGA SP2 LINC02396 LINC02395 FAIM2 AQP2
GH12J049913 Enhancer 0.8 Ensembl dbSUPER 0.7 -2.0 -2009 1 ZIC2 SCRT2 ZBTB44 CEBPB ZBTB17 GTF2F1 ZKSCAN1 ZNF423 MAX NFIC FAIM2 LINC02396 LINC02395 lnc-FAIM2-2 AQP2
GH12J049920 Enhancer 0.5 Ensembl 0.4 -8.1 -8109 2 ZNF512 PRDM1 CEBPB ZNF366 JUN RAD21 HLF CTCF ZNF121 FAIM2 LINC02396 lnc-FAIM2-2 LINC02395 AQP2
GH12J049925 Enhancer 0.5 Ensembl 0.4 -14.0 -14009 1.8 ZSCAN4 MNT ZNF8 ZNF184 NFATC1 ZNF121 lnc-FAIM2-2 LINC02396 AQP2 FAIM2 LINC02395
GH12J049924 Enhancer 0.4 Ensembl 0.4 -11.6 -11608 0.6 ZNF316 MAFF MAFK lnc-FAIM2-2 LINC02396 FAIM2 LINC02395 AQP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02396 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02396 Gene

Genomic Locations for LINC02396 Gene
chr12:49,908,882-49,912,292
(GRCh38/hg38)
Size:
3,411 bases
Orientation:
Minus strand
chr12:50,302,665-50,305,646
(GRCh37/hg19)
Size:
2,982 bases
Orientation:
Minus strand

Genomic View for LINC02396 Gene

Genes around LINC02396 on UCSC Golden Path with GeneCards custom track
LINC02396 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02396 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02396 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02396 Gene

Proteins for LINC02396 Gene

Post-translational modifications for LINC02396 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02396 Gene

Domains & Families for LINC02396 Gene

Gene Families for LINC02396 Gene

genes like me logo Genes that share domains with LINC02396: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02396 Gene

Function for LINC02396 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02396 Gene

Localization for LINC02396 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02396 Gene

Pathways & Interactions for LINC02396 Gene

PathCards logo

SuperPathways for LINC02396 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02396 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02396 Gene

Drugs & Compounds for LINC02396 Gene

No Compound Related Data Available

Transcripts for LINC02396 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02396 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001CDAFE_9606 lncRNA 891 4

Ensembl: ENST00000552628 (view in UCSC) ,

LncBook: HSALNT0188810,

LNCipedia: LINC02396:15,

NONCODE: NONHSAT028152.2,

URS000016DBC4_9606 lncRNA 300 4

Ensembl: ENST00000546911 (view in UCSC) ,

LncBook: HSALNT0188807,

LNCipedia: LINC02396:18,

NONCODE: NONHSAT028149.2,

URS0000444C12_9606 lncRNA 525 3

Ensembl: ENST00000551922 (view in UCSC) ,

LNCipedia: LINC02396:17,

NONCODE: NONHSAT028148.2,

URS00000D1799_9606 lncRNA 282 3

RefSeq: NR_146570,

Ensembl: ENST00000552768 (view in UCSC) ,

LNCipedia: LINC02396:13,

URS000075ABB7_9606 lncRNA 2340 2

HGNC: 27463,

RefSeq: NR_026948,

LINC02396 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02396 Gene

5 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02396 Gene

No ASD Table

Relevant External Links for LINC02396 Gene

GeneLoc Exon Structure for
LINC02396

Expression for LINC02396 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02396

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02396 Gene

Orthologs for LINC02396 Gene

Evolution for LINC02396 Gene

ENSEMBL:
Gene Tree for LINC02396 (if available)
TreeFam:
Gene Tree for LINC02396 (if available)

No data available for Orthologs for LINC02396 Gene

Paralogs for LINC02396 Gene

No data available for Paralogs for LINC02396 Gene

Variants for LINC02396 Gene

Additional dbSNP identifiers (rs#s) for LINC02396 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02396 Gene

Variant ID Type Subtype PubMed ID
nsv522972 CNV gain 19592680
nsv525920 CNV loss 19592680
nsv558835 CNV gain 21841781
nsv558836 CNV loss 21841781
nsv832407 CNV loss 17160897

Additional Variant Information for LINC02396 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02396

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02396 Gene

Disorders for LINC02396 Gene

No disorders were found for LINC02396 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02396 Gene

Publications for LINC02396 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02396 Gene

Products for LINC02396 Gene

Sources for LINC02396 Gene