Aliases for LINC02394 Gene

Data sources for LINC02394 Gene:

RNA type for LINC02394 Gene

lncRNA

Aliases for LINC02394 Gene

External Ids for LINC02394 Gene

Summaries for LINC02394 Gene

GeneCards Summary for LINC02394 Gene

LINC02394 (Long Intergenic Non-Protein Coding RNA 2394) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02394 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02394 Gene

Genomics for LINC02394 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02394 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J074042 Enhancer 0.9 Ensembl ENCODE 0.7 +4.4 4423 1.7 JUND ZNF217 ELF1 CTBP1 CUX1 ZNF316 NFE2 TCF7L2 SMARCE1 FOXA1 ATXN7L3B LINC02394 piR-40476-022 LINC02882
GH12J074043 Enhancer 0.2 Ensembl 0.7 +3.4 3377 0.4 LINC02394 piR-40476-022 LINC02882 ATXN7L3B
GH12J074050 Enhancer 0.2 Ensembl 0.4 +12.2 12177 1.6 piR-40476-022 LINC02394 LINC02882 ATXN7L3B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02394 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02394 Gene

Latest Assembly
chr12:74,039,024-74,049,981
(GRCh38/hg38)
Size:
10,958 bases
Orientation:
Plus strand

Previous Assembly
chr12:74,432,866-74,439,608
(GRCh37/hg19 by Ensembl)
Size:
6,743 bases
Orientation:
Plus strand

Genomic View for LINC02394 Gene

Genes around LINC02394 on UCSC Golden Path with GeneCards custom track
LINC02394 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02394 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02394 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02394 Gene

Proteins for LINC02394 Gene

Post-translational modifications for LINC02394 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02394 Gene

Domains & Families for LINC02394 Gene

Gene Families for LINC02394 Gene

genes like me logo Genes that share domains with LINC02394: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02394 Gene

Function for LINC02394 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02394 Gene

Localization for LINC02394 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02394 Gene

Pathways & Interactions for LINC02394 Gene

PathCards logo

SuperPathways for LINC02394 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02394 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02394 Gene

Drugs & Compounds for LINC02394 Gene

No Compound Related Data Available

Transcripts for LINC02394 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02394 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000DB8285_9606 lncRNA 2009 1

Ensembl: ENST00000647598 (view in UCSC) ,

URS0000EF0455_9606 lncRNA 981 1

Ensembl: ENST00000549140 (view in UCSC) ,

URS000055D9ED_9606 lncRNA 543 3

LncBook: HSALNT0191480,

LNCipedia: LINC02394:3,

NONCODE: NONHSAT029495.2,

URS0001BD5694_9606 lncRNA 1815 1

LncBook: HSALNT0191479,

URS0001BE6F78_9606 lncRNA 543 1

LncBook: HSALNT0191480,

LINC02394 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02394 Gene

No ASD Table

Relevant External Links for LINC02394 Gene

GeneLoc Exon Structure for
LINC02394

No data available for mRNA/cDNA for LINC02394 Gene

Expression for LINC02394 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02394 Gene

Orthologs for LINC02394 Gene

Evolution for LINC02394 Gene

ENSEMBL:
Gene Tree for LINC02394 (if available)
TreeFam:
Gene Tree for LINC02394 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02394

No data available for Orthologs for LINC02394 Gene

Paralogs for LINC02394 Gene

No data available for Paralogs for LINC02394 Gene

Variants for LINC02394 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02394 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02394 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02394
Leiden Open Variation Database (LOVD)
LINC02394

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02394 Gene

Disorders for LINC02394 Gene

Additional Disease Information for LINC02394

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02394 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02394 Gene

Publications for LINC02394 Gene

No publications were found for LINC02394 Gene.

Products for LINC02394 Gene

Sources for LINC02394 Gene