Aliases for LINC02393 Gene

Subcategory (RNA class) for LINC02393 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02393 Gene

  • Long Intergenic Non-Protein Coding RNA 2393 2 3 5
  • LINC02393 2 168
  • NONHSAG012718 92
  • HSALNG0095036 167

External Ids for LINC02393 Gene

Summaries for LINC02393 Gene

GeneCards Summary for LINC02393 Gene

LINC02393 (Long Intergenic Non-Protein Coding RNA 2393) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02393 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02393 Gene

Genomics for LINC02393 Gene

GeneHancer (GH) Regulatory Elements for LINC02393 Gene

Promoters and enhancers for LINC02393 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J127881 Enhancer 0.2 Ensembl 500.7 +0.1 85 0.2 LINC02393 LINC00507
GH12J127902 Enhancer 0.5 Ensembl ENCODE 0.4 +21.9 21890 1 TEAD4 SP1 LINC00507 LINC02393 LINC00508
GH12J127893 Enhancer 0.4 Ensembl 0.4 +12.6 12585 0.8 CTCF RAD21 ZNF143 LINC02393 LINC00507 LINC00508
GH12J127888 Enhancer 0.3 ENCODE 0.4 +7.4 7433 1.2 ATF2 GATA2 LINC02393 LINC00507 LINC00508
GH12J127885 Enhancer 0.2 ENCODE 0.4 +5.2 5163 2.8 LINC02393 LINC00507 LINC00508
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02393 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02393 Gene

Genomic Locations for LINC02393 Gene
chr12:127,881,616-127,898,645
(GRCh38/hg38)
Size:
17,030 bases
Orientation:
Plus strand
chr12:128,366,162-128,383,184
(GRCh37/hg19)
Size:
17,023 bases
Orientation:
Plus strand

Genomic View for LINC02393 Gene

Genes around LINC02393 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02393 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02393 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02393 Gene

Proteins for LINC02393 Gene

Post-translational modifications for LINC02393 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02393 Gene

Domains & Families for LINC02393 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02393 Gene

Function for LINC02393 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02393 Gene

Localization for LINC02393 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02393 Gene

Pathways & Interactions for LINC02393 Gene

PathCards logo

SuperPathways for LINC02393 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02393 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02393 Gene

Drugs & Compounds for LINC02393 Gene

No Compound Related Data Available

Transcripts for LINC02393 Gene

mRNA/cDNA for LINC02393 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
2 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02393 Gene

No ASD Table

Relevant External Links for LINC02393 Gene

GeneLoc Exon Structure for
LINC02393

Expression for LINC02393 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02393 Gene

Orthologs for LINC02393 Gene

Evolution for LINC02393 Gene

ENSEMBL:
Gene Tree for LINC02393 (if available)
TreeFam:
Gene Tree for LINC02393 (if available)

No data available for Orthologs for LINC02393 Gene

Paralogs for LINC02393 Gene

No data available for Paralogs for LINC02393 Gene

Variants for LINC02393 Gene

Additional dbSNP identifiers (rs#s) for LINC02393 Gene

Additional Variant Information for LINC02393 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02393

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02393 Gene

Disorders for LINC02393 Gene

Additional Disease Information for LINC02393

No disorders were found for LINC02393 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02393 Gene

Publications for LINC02393 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for LINC02393 Gene

Sources for LINC02393 Gene