LINC02392 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2392

GC12P090282
GIFtS:
9

Aliases for LINC02392 Gene

Subcategory (RNA class) for LINC02392 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC02392 Gene

  • Long Intergenic Non-Protein Coding RNA 2392 2 3 5
  • LINC02392 2 170
  • NONHSAG011878 94
  • HSALNG0092974 169

External Ids for LINC02392 Gene

Summaries for LINC02392 Gene

GeneCards Summary for LINC02392 Gene

LINC02392 (Long Intergenic Non-Protein Coding RNA 2392) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02392 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02392 Gene

Genomics for LINC02392 Gene

GeneHancer (GH) Regulatory Elements for LINC02392 Gene

Promoters and enhancers for LINC02392 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J090280 Enhancer 1 FANTOM5 Ensembl ENCODE 759.8 -0.3 -293 1.2 ETV6 RELA CREM ZBED1 IKZF1 IKZF2 ZNF143 PKNOX1 CBFB DPF2 LINC02392 LOC105369892
GH12J090210 Enhancer 0.7 Ensembl ENCODE 7.3 -69.7 -69657 1.9 ZNF362 MAFK FOSL2 JUN FOS ZNF843 PRDM6 MAFF LINC02392 lnc-ATP2B1-3 lnc-ATP2B1-4 HSALNG0092970
GH12J090229 Enhancer 0.5 Ensembl ENCODE 7.8 -51.3 -51293 2.4 NR2F2 JUN LINC02392 lnc-ATP2B1-4 lnc-ATP2B1-3 HSALNG0092970
GH12J090234 Enhancer 0.5 Ensembl ENCODE 7.4 -46.0 -45993 3.4 CEBPG KLF17 LINC02392 lnc-ATP2B1-4 lnc-ATP2B1-3 HSALNG0092970
GH12J090260 Enhancer 0.6 Ensembl ENCODE 6.5 -19.2 -19158 3.3 POLR2A SP1 FOSL2 LINC02392 LOC105369892
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02392 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02392 Gene

Genomic Locations for LINC02392 Gene
chr12:90,280,894-90,317,205
(GRCh38/hg38)
Size:
36,312 bases
Orientation:
Plus strand
chr12:90,674,671-90,694,117
(GRCh37/hg19)
Size:
19,447 bases
Orientation:
Plus strand

Genomic View for LINC02392 Gene

Genes around LINC02392 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02392 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02392 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02392 Gene

Proteins for LINC02392 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02392 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02392 Gene

Domains & Families for LINC02392 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02392 Gene

Function for LINC02392 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02392 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02392 Gene

Localization for LINC02392 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02392 Gene

Pathways & Interactions for LINC02392 Gene

PathCards logo

SuperPathways for LINC02392 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02392 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02392 Gene

Drugs & Compounds for LINC02392 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02392 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC02392 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(11) RNACentral transcripts :
(6) LncBook transcripts :
(11) LNCipedia transcripts :
(5) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02392 Gene

No ASD Table

Relevant External Links for LINC02392 Gene

GeneLoc Exon Structure for
LINC02392
ECgene alternative splicing isoforms for
LINC02392

Expression for LINC02392 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02392 Gene

Orthologs for LINC02392 Gene

Evolution for LINC02392 Gene

ENSEMBL:
Gene Tree for LINC02392 (if available)
TreeFam:
Gene Tree for LINC02392 (if available)

No data available for Orthologs for LINC02392 Gene

Paralogs for LINC02392 Gene

No data available for Paralogs for LINC02392 Gene

Variants for LINC02392 Gene

Sequence variations from dbSNP and Humsavar for LINC02392 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000258834 -- 90,295,556(+) G/A intron_variant
rs1000338992 -- 90,298,472(+) T/A/C intron_variant
rs1000433730 -- 90,298,119(+) G/A intron_variant
rs1000480651 -- 90,294,601(+) T/G intron_variant
rs1000622744 -- 90,299,780(+) A/C/G intron_variant

Additional Variant Information for LINC02392 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02392

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02392 Gene

Disorders for LINC02392 Gene

Additional Disease Information for LINC02392

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC02392 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02392 Gene

Publications for LINC02392 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

No data available for External Links for LINC02392 Gene

Products for LINC02392 Gene

Sources for LINC02392 Gene