LINC02392 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2392

GC12P090282
GIFtS:
9
See more...

Aliases for LINC02392 Gene

Subcategory (RNA class) for LINC02392 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02392 Gene

  • Long Intergenic Non-Protein Coding RNA 2392 2 3 5
  • LINC02392 2 5 165
  • NONHSAG011878.2 91
  • HSALNG0092974 164

External Ids for LINC02392 Gene

Summaries for LINC02392 Gene

GeneCards Summary for LINC02392 Gene

LINC02392 (Long Intergenic Non-Protein Coding RNA 2392) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02392 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02392 Gene

Genomics for LINC02392 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC02392 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J090280 Promoter/Enhancer 1.4 EPDnew FANTOM5 Ensembl ENCODE 609.8 -0.3 -293 1.2 ZNF143 RELA IKZF2 PKNOX1 EED ARID3A DPF2 RELB RUNX3 GATAD2B LINC02392 LOC105369892 ATP2B1 CCER1
GH12J090210 Enhancer 0.7 Ensembl ENCODE 7.3 -69.7 -69657 1.9 ELK4 FOSL2 ZNF184 MAFK ZNF843 PRDM6 JUN FOS MAFF ZNF362 LINC02392 lnc-ATP2B1-3 HSALNG0092970 lnc-ATP2B1-4 ATP2B1 CCER1
GH12J090229 Enhancer 0.6 Ensembl ENCODE 7.8 -51.3 -51293 2.4 TEAD4 NR2F2 JUN LINC02392 lnc-ATP2B1-4 lnc-ATP2B1-3 HSALNG0092970 ATP2B1 CCER1
GH12J090234 Enhancer 0.6 Ensembl ENCODE 7.4 -46.0 -45993 3.4 CEBPG CEBPB KLF17 LINC02392 lnc-ATP2B1-4 lnc-ATP2B1-3 HSALNG0092970 ATP2B1 CCER1
GH12J090260 Enhancer 0.6 Ensembl ENCODE 6.5 -19.2 -19158 3.3 POLR2A SP1 FOSL2 SMARCA4 LINC02392 LOC105369892 ATP2B1 CCER1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02392 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02392 Gene

Genomic Locations for LINC02392 Gene
chr12:90,280,894-90,317,205
(GRCh38/hg38)
Size:
36,312 bases
Orientation:
Plus strand
chr12:90,674,671-90,694,117
(GRCh37/hg19)
Size:
19,447 bases
Orientation:
Plus strand

Genomic View for LINC02392 Gene

Genes around LINC02392 on UCSC Golden Path with GeneCards custom track
LINC02392 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02392 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02392 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02392 Gene

Proteins for LINC02392 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02392 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02392 Gene

Domains & Families for LINC02392 Gene

Gene Families for LINC02392 Gene

HGNC:
genes like me logo Genes that share domains with LINC02392: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02392 Gene

Function for LINC02392 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02392 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02392 Gene

Localization for LINC02392 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02392 Gene

Pathways & Interactions for LINC02392 Gene

PathCards logo

SuperPathways for LINC02392 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02392 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02392 Gene

Drugs & Compounds for LINC02392 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02392 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02392 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000DC7B3_9606 lncRNA 537 4

Ensembl: ENST00000548172 (view in UCSC) ,

LncBook: HSALNT0192802,

LNCipedia: LINC02392:21,

NONCODE: NONHSAT029842.2,

URS000038FA9D_9606 lncRNA 521 4

Ensembl: ENST00000549470 (view in UCSC) ,

LncBook: HSALNT0192800,

LNCipedia: LINC02392:20,

NONCODE: NONHSAT029841.2,

URS0000A7673B_9606 lncRNA 879 3

HGNC: 53319,

RefSeq: NR_135018,

LNCipedia: LINC02392:10,

URS000023C636_9606 lncRNA 574 3

Ensembl: ENST00000549313 (view in UCSC) ,

LNCipedia: LINC02392:13, LINC02392:15,

NONCODE: NONHSAT029840.2,

URS0000EEC0F7_9606 lncRNA 1494 1

Ensembl: ENST00000658748 (view in UCSC) ,

LINC02392 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02392 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02392 Gene

No ASD Table

Relevant External Links for LINC02392 Gene

GeneLoc Exon Structure for
LINC02392

Expression for LINC02392 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02392 Gene

Orthologs for LINC02392 Gene

Evolution for LINC02392 Gene

ENSEMBL:
Gene Tree for LINC02392 (if available)
TreeFam:
Gene Tree for LINC02392 (if available)

No data available for Orthologs for LINC02392 Gene

Paralogs for LINC02392 Gene

No data available for Paralogs for LINC02392 Gene

Variants for LINC02392 Gene

Additional dbSNP identifiers (rs#s) for LINC02392 Gene

Additional Variant Information for LINC02392 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02392

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02392 Gene

Disorders for LINC02392 Gene

Additional Disease Information for LINC02392

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC02392 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02392 Gene

Publications for LINC02392 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for LINC02392 Gene

Products for LINC02392 Gene

Sources for LINC02392 Gene