Aliases for LINC02388 Gene

Subcategory (RNA class) for LINC02388 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC02388 Gene

  • Long Intergenic Non-Protein Coding RNA 2388 2 3 5
  • LINC02388 2 5 165
  • NONHSAG011471.2 91

External Ids for LINC02388 Gene

Summaries for LINC02388 Gene

GeneCards Summary for LINC02388 Gene

LINC02388 (Long Intergenic Non-Protein Coding RNA 2388) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02388 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02388 Gene

Genomics for LINC02388 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02388 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J058781 Promoter 0.3 EPDnew 600.7 +0.0 11 0.1 LINC02388 piR-38351-100 LRIG3 LOC100506869 ENSG00000258231 ATP23
GH12J058763 Enhancer 1.1 Ensembl ENCODE 0.4 +16.5 16469 3 GATAD2A REST TFE3 NFKBIZ NFRKB RCOR2 FOXA1 RFX1 RXRB IRF2 ENSG00000257953 LINC02388 piR-38351-100 LRIG3 LOC100506869 ENSG00000258231 ATP23
GH12J058756 Enhancer 0.6 Ensembl ENCODE 0.4 +24.0 24046 2.2 CEBPB ZNF266 FOS MAFK JUN CTDSP2 EEF1AKMT3 piR-38351-100 LINC02388 LRIG3 LOC100506869 ENSG00000258231 ATP23
GH12J058749 Enhancer 0.7 Ensembl ENCODE 0.3 +31.2 31180 1.2 CEBPB JUND FOS FOSL2 BHLHE40 MAFK JUN NFE2L2 piR-38351-100 LINC02388 LOC100506869 LRIG3 ENSG00000258231 ATP23
GH12J058804 Enhancer 0.5 Ensembl ENCODE 0.4 -22.4 -22354 0.6 CEBPB FOS HSALNG0091723 LINC02388 LRIG3 LOC100506869 ENSG00000258231 ATP23
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02388 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02388 Gene

Genomic Locations for LINC02388 Gene
chr12:58,565,959-58,781,747
(GRCh38/hg38)
Size:
215,789 bases
Orientation:
Minus strand
chr12:58,959,743-59,175,529
(GRCh37/hg19)
Size:
215,787 bases
Orientation:
Minus strand

Genomic View for LINC02388 Gene

Genes around LINC02388 on UCSC Golden Path with GeneCards custom track
LINC02388 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02388 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02388 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02388 Gene

Proteins for LINC02388 Gene

Post-translational modifications for LINC02388 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02388 Gene

Domains & Families for LINC02388 Gene

Gene Families for LINC02388 Gene

genes like me logo Genes that share domains with LINC02388: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02388 Gene

Function for LINC02388 Gene

Phenotypes From GWAS Catalog for LINC02388 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02388 Gene

Localization for LINC02388 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02388 Gene

Pathways & Interactions for LINC02388 Gene

PathCards logo

SuperPathways for LINC02388 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02388 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02388 Gene

Drugs & Compounds for LINC02388 Gene

No Compound Related Data Available

Transcripts for LINC02388 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02388 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004611C9_9606 lncRNA 1975 3

Ensembl: ENST00000550678 (view in UCSC) ,

LNCipedia: LINC02388:6,

NONCODE: NONHSAT029025.2,

URS000012E445_9606 lncRNA 537 3

Ensembl: ENST00000552201 (view in UCSC) ,

LNCipedia: LINC02388:5,

NONCODE: NONHSAT029030.2,

URS000075DCA9_9606 lncRNA 1976 2

HGNC: 53315,

RefSeq: NR_120452,

URS0000EED4C8_9606 lncRNA 1499 1

Ensembl: ENST00000668012 (view in UCSC) ,

URS0000DB94A5_9606 lncRNA 1254 1

Ensembl: ENST00000648243 (view in UCSC) ,

LINC02388 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02388 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02388 Gene

No ASD Table

Relevant External Links for LINC02388 Gene

GeneLoc Exon Structure for
LINC02388

Expression for LINC02388 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02388

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02388 Gene

Orthologs for LINC02388 Gene

Evolution for LINC02388 Gene

ENSEMBL:
Gene Tree for LINC02388 (if available)
TreeFam:
Gene Tree for LINC02388 (if available)

No data available for Orthologs for LINC02388 Gene

Paralogs for LINC02388 Gene

No data available for Paralogs for LINC02388 Gene

Variants for LINC02388 Gene

Additional dbSNP identifiers (rs#s) for LINC02388 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02388 Gene

Variant ID Type Subtype PubMed ID
esv1009996 CNV insertion 20482838
esv2287179 CNV deletion 18987734
esv2553370 CNV deletion 19546169
esv2609760 CNV insertion 19546169
esv2759902 CNV gain 17122850
nsv1049807 CNV gain 25217958
nsv1146687 CNV duplication 26484159
nsv1160034 CNV deletion 26073780
nsv826390 CNV loss 20364138
nsv832429 CNV loss 17160897

Additional Variant Information for LINC02388 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02388

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02388 Gene

Disorders for LINC02388 Gene

No disorders were found for LINC02388 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02388 Gene

Publications for LINC02388 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LINC02388 Gene

Products for LINC02388 Gene

Sources for LINC02388 Gene