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Aliases for LINC02388 Gene
Subcategory (RNA class) for LINC02388 Gene
lncRNA
Number of RNA Genes sources:
2 / 17
Aliases for LINC02388 Gene
External Ids for LINC02388 Gene
- HGNC: 53315
- Entrez Gene: 101927653
- Ensembl: ENSG00000257259
Summaries for LINC02388 Gene
GeneCards Summary for LINC02388 Gene
LINC02388 (Long Intergenic Non-Protein Coding RNA 2388) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC02388 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02388 Gene
Genomics for LINC02388 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC02388 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J058781 | Promoter | 0.3 | EPDnew | 600.7 | +0.0 | 11 | 0.1 | LINC02388 piR-38351-100 LRIG3 LOC100506869 ENSG00000258231 ATP23 | ||
| GH12J058763 | Enhancer | 1.1 | Ensembl ENCODE | 0.4 | +16.5 | 16469 | 3 | GATAD2A REST TFE3 NFKBIZ NFRKB RCOR2 FOXA1 RFX1 RXRB IRF2 | ENSG00000257953 LINC02388 piR-38351-100 LRIG3 LOC100506869 ENSG00000258231 ATP23 | |
| GH12J058756 | Enhancer | 0.6 | Ensembl ENCODE | 0.4 | +24.0 | 24046 | 2.2 | CEBPB ZNF266 FOS MAFK JUN | CTDSP2 EEF1AKMT3 piR-38351-100 LINC02388 LRIG3 LOC100506869 ENSG00000258231 ATP23 | |
| GH12J058749 | Enhancer | 0.7 | Ensembl ENCODE | 0.3 | +31.2 | 31180 | 1.2 | CEBPB JUND FOS FOSL2 BHLHE40 MAFK JUN NFE2L2 | piR-38351-100 LINC02388 LOC100506869 LRIG3 ENSG00000258231 ATP23 | |
| GH12J058804 | Enhancer | 0.5 | Ensembl ENCODE | 0.4 | -22.4 | -22354 | 0.6 | CEBPB FOS | HSALNG0091723 LINC02388 LRIG3 LOC100506869 ENSG00000258231 ATP23 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02388 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC02388 Gene
Genomic Locations for LINC02388 Gene
- chr12:58,565,959-58,781,747
- (GRCh38/hg38)
- Size:
- 215,789 bases
- Orientation:
- Minus strand
- chr12:58,959,743-59,175,529
- (GRCh37/hg19)
- Size:
- 215,787 bases
- Orientation:
- Minus strand
Genomic View for LINC02388 Gene
Genes around LINC02388 on UCSC Golden Path with GeneCards custom track
LINC02388 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 12q14.1 by HGNC
- 12q14.1 by Entrez Gene
- 12q14.1 by Ensembl
LINC02388 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC02388 Gene
Proteins for LINC02388 Gene
Post-translational modifications for LINC02388 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02388
- Origene Custom Protein Services for LINC02388
No data available for DME Specific Peptides for LINC02388 Gene
Domains & Families for LINC02388 Gene
Gene Families for LINC02388 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02388 Gene
Function for LINC02388 Gene
Phenotypes From GWAS Catalog for LINC02388 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LINC02388
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02388 Gene
Localization for LINC02388 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02388 Gene
Transcripts for LINC02388 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02388 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00004611C9_9606 | lncRNA | 1975 | 3 |
Ensembl: ENST00000550678 (view in UCSC) , LNCipedia: LINC02388:6, NONCODE: NONHSAT029025.2, |
| URS000012E445_9606 | lncRNA | 537 | 3 |
Ensembl: ENST00000552201 (view in UCSC) , LNCipedia: LINC02388:5, NONCODE: NONHSAT029030.2, |
| URS000075DCA9_9606 | lncRNA | 1976 | 2 |
HGNC: 53315, RefSeq: NR_120452, |
| URS0000EED4C8_9606 | lncRNA | 1499 | 1 |
Ensembl: ENST00000668012 (view in UCSC) , |
| URS0000DB94A5_9606 | lncRNA | 1254 | 1 |
Ensembl: ENST00000648243 (view in UCSC) , |
LINC02388 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC02388 Gene
- 3 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for LINC02388
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LINC02388 Gene
- GeneLoc Exon Structure for
- LINC02388
Expression for LINC02388 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02388
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02388 Gene
Orthologs for LINC02388 Gene
No data available for Orthologs for LINC02388 Gene
Paralogs for LINC02388 Gene
No data available for Paralogs for LINC02388 Gene
Variants for LINC02388 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv1009996 | CNV | insertion | 20482838 |
| esv2287179 | CNV | deletion | 18987734 |
| esv2553370 | CNV | deletion | 19546169 |
| esv2609760 | CNV | insertion | 19546169 |
| esv2759902 | CNV | gain | 17122850 |
| nsv1049807 | CNV | gain | 25217958 |
| nsv1146687 | CNV | duplication | 26484159 |
| nsv1160034 | CNV | deletion | 26073780 |
| nsv826390 | CNV | loss | 20364138 |
| nsv832429 | CNV | loss | 17160897 |
Additional Variant Information for LINC02388 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC02388
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02388 Gene
Disorders for LINC02388 Gene
Additional Disease Information for LINC02388
No disorders were found for LINC02388 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02388 Gene
Publications for LINC02388 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
No data available for Mastermind for LINC02388 Gene
Products for LINC02388 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02388
- Origene Custom Protein Services for LINC02388
- Browse OriGene Inhibitory RNA Products For LINC02388
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC02388
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02388
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC02388
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC02388
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02388
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC02388
Sources for LINC02388 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB