Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC02387 Gene

Subcategory (RNA class) for LINC02387 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02387 Gene

  • Long Intergenic Non-Protein Coding RNA 2387 2 3 5

External Ids for LINC02387 Gene

Summaries for LINC02387 Gene

GeneCards Summary for LINC02387 Gene

LINC02387 (Long Intergenic Non-Protein Coding RNA 2387) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02387 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02387 Gene

Genomics for LINC02387 Gene

GeneHancer (GH) Regulatory Elements for LINC02387 Gene

Promoters and enhancers for LINC02387 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J031368 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 650.7 -0.3 -295 3.7 PKNOX1 FOXA2 ARID4B ZNF121 KLF7 ATF7 NFKBIZ REST TSHZ1 PPARG LINC02387 DENND5B DENND5B-AS1 RNU5F-4P SINHCAF AK4P3 DDX11 ETFBKMT GC12M031383
GH12J031361 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +7.0 7017 2.4 HDGF PKNOX1 ATF1 FOXA2 ARID4B ZNF48 GLIS2 RUNX3 SP5 YY2 SINHCAF RNU6-618P FLJ13224 AK4P3 DDX11 DENND5B ENSG00000283256 LINC02387 GC12P031343
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02387 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02387 Gene

Genomic Locations for LINC02387 Gene
chr12:31,363,481-31,370,055
(GRCh38/hg38)
Size:
6,575 bases
Orientation:
Minus strand
chr12:31,516,415-31,522,235
(GRCh37/hg19)
Size:
5,821 bases
Orientation:
Minus strand

Genomic View for LINC02387 Gene

Genes around LINC02387 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02387 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02387 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02387 Gene

Proteins for LINC02387 Gene

Post-translational modifications for LINC02387 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02387 Gene

Domains & Families for LINC02387 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02387 Gene

Function for LINC02387 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02387 Gene

Localization for LINC02387 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02387 Gene

Pathways & Interactions for LINC02387 Gene

SuperPathways for LINC02387 Gene

No Data Available

Interacting Proteins for LINC02387 Gene

Gene Ontology (GO) - Biological Process for LINC02387 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02387 Gene

Drugs & Compounds for LINC02387 Gene

No Compound Related Data Available

Transcripts for LINC02387 Gene

mRNA/cDNA for LINC02387 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02387 Gene

No ASD Table

Relevant External Links for LINC02387 Gene

GeneLoc Exon Structure for
LINC02387
ECgene alternative splicing isoforms for
LINC02387

Expression for LINC02387 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02387 Gene

Orthologs for LINC02387 Gene

Evolution for LINC02387 Gene

ENSEMBL:
Gene Tree for LINC02387 (if available)
TreeFam:
Gene Tree for LINC02387 (if available)

No data available for Orthologs for LINC02387 Gene

Paralogs for LINC02387 Gene

No data available for Paralogs for LINC02387 Gene

Variants for LINC02387 Gene

Sequence variations from dbSNP and Humsavar for LINC02387 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000170886 -- 31,370,596(-) A/G upstream_transcript_variant
rs1001040580 -- 31,365,344(-) G/A intron_variant
rs1001778637 -- 31,363,861(-) G/C intron_variant
rs1002381186 -- 31,367,008(-) G/A intron_variant
rs1002506500 -- 31,365,718(-) G/A intron_variant

Additional Variant Information for LINC02387 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02387

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02387 Gene

Disorders for LINC02387 Gene

Additional Disease Information for LINC02387

No disorders were found for LINC02387 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02387 Gene

Publications for LINC02387 Gene

  1. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC02387 Gene

Sources for LINC02387 Gene

Content
Loading form....