Aliases for LINC02384 Gene

Subcategory (RNA class) for LINC02384 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02384 Gene

  • Long Intergenic Non-Protein Coding RNA 2384 2 3 5
  • LINC02384 2 5 165
  • NONHSAG011610.2 91
  • HSALNG0092152 164

External Ids for LINC02384 Gene

Summaries for LINC02384 Gene

GeneCards Summary for LINC02384 Gene

LINC02384 (Long Intergenic Non-Protein Coding RNA 2384) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02384 include Sjogren Syndrome.

Additional gene information for LINC02384 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02384 Gene

Genomics for LINC02384 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02384 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J068445 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 639.5 +1.9 1887 8.1 TEAD4 RFX1 STAT3 ZNF143 RELA IKZF2 RCOR1 TRIM22 PKNOX1 EED LINC02384 ENSG00000247363 NUP107 MDM1 RPL10P12 SNORA70G RPL7P42 piR-40250-003 RAP1B lnc-NUP107-26
GH12J068443 Promoter/Enhancer 0.8 EPDnew dbSUPER 600.4 +9.5 9458 0.1 RELB IKZF1 BMI1 TBX21 ATF7 MTA2 piR-40250-003 LINC02384 MDM1 RF00017-1178 RAP1B lnc-NUP107-26
GH12J068478 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 42.2 -29.9 -29913 5.7 SP1 BACH1 JUND RELA TCF12 IKZF2 RCOR1 TRIM22 YY1 PKNOX1 LINC02384 IFNG MDM1 NUP107 ENSG00000247363 piR-59409-024 PSMC6P2 RAP1B lnc-NUP107-26
GH12J068454 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 39.3 -4.0 -3960 2.3 ATF7 PKNOX1 GABPA NR2C2 GABPB1 ETV1 ATF2 YY1 ZBTB40 ZNF24 LINC02384 MDM1 RAP1B PSMC6P2 lnc-NUP107-26
GH12J068609 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.2 -160.8 -160837 6.7 CREB1 TEAD4 PRDM10 ZNF629 REST ZNF512 LEF1 IKZF1 ZNF692 POLR2A RAP1B lnc-CPM-8 NUP107 CPM LINC02384 MDM1 MDM2 IFNG lnc-NUP107-3 lnc-NUP107-26
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02384 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02384 Gene

Genomic Locations for LINC02384 Gene
chr12:68,332,792-68,451,696
(GRCh38/hg38)
Size:
118,905 bases
Orientation:
Minus strand
chr12:68,726,553-68,797,578
(GRCh37/hg19)
Size:
71,026 bases
Orientation:
Minus strand

Genomic View for LINC02384 Gene

Genes around LINC02384 on UCSC Golden Path with GeneCards custom track
LINC02384 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02384 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02384 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02384 Gene

Proteins for LINC02384 Gene

Post-translational modifications for LINC02384 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02384 Gene

Domains & Families for LINC02384 Gene

Gene Families for LINC02384 Gene

genes like me logo Genes that share domains with LINC02384: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02384 Gene

Function for LINC02384 Gene

Phenotypes From GWAS Catalog for LINC02384 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02384 Gene

Localization for LINC02384 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02384 Gene

Pathways & Interactions for LINC02384 Gene

PathCards logo

SuperPathways for LINC02384 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02384 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02384 Gene

Drugs & Compounds for LINC02384 Gene

No Compound Related Data Available

Transcripts for LINC02384 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02384 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000393991_9606 lncRNA 904 4

Ensembl: ENST00000541707 (view in UCSC) ,

LncBook: HSALNT0190940,

LNCipedia: LINC02384:51,

NONCODE: NONHSAT029295.2,

URS00004F071E_9606 lncRNA 785 4

Ensembl: ENST00000539404 (view in UCSC) ,

LncBook: HSALNT0190941,

LNCipedia: LINC02384:48,

NONCODE: NONHSAT029296.2,

URS000031E6E1_9606 lncRNA 565 4

Ensembl: ENST00000546086 (view in UCSC) ,

LncBook: HSALNT0190942,

LNCipedia: LINC02384:40,

NONCODE: NONHSAT029297.2,

URS000045EAC3_9606 lncRNA 437 4

Ensembl: ENST00000536094 (view in UCSC) ,

LncBook: HSALNT0190952,

LNCipedia: LINC02384:49,

NONCODE: NONHSAT029301.2,

URS000013BD16_9606 lncRNA 417 4

Ensembl: ENST00000536112 (view in UCSC) ,

LncBook: HSALNT0190969,

LNCipedia: LINC02384:47,

NONCODE: NONHSAT029309.2,

LINC02384 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02384 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02384 Gene

No ASD Table

Relevant External Links for LINC02384 Gene

GeneLoc Exon Structure for
LINC02384

Expression for LINC02384 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02384

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02384 Gene

Orthologs for LINC02384 Gene

Evolution for LINC02384 Gene

ENSEMBL:
Gene Tree for LINC02384 (if available)
TreeFam:
Gene Tree for LINC02384 (if available)

No data available for Orthologs for LINC02384 Gene

Paralogs for LINC02384 Gene

No data available for Paralogs for LINC02384 Gene

Variants for LINC02384 Gene

Additional dbSNP identifiers (rs#s) for LINC02384 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02384 Gene

Variant ID Type Subtype PubMed ID
nsv758 CNV insertion 18451855
nsv952199 CNV duplication 24416366

Additional Variant Information for LINC02384 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02384

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02384 Gene

Disorders for LINC02384 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC02384 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
sjogren syndrome
  • sicca syndrome
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC02384: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02384 Gene

Publications for LINC02384 Gene

  1. Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci. (PMID: 22365631) Greenwood TA … Kelsoe JR (Biological psychiatry 2012) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for LINC02384 Gene

Sources for LINC02384 Gene