Aliases for LINC02381 Gene

Subcategory (RNA class) for LINC02381 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC02381 Gene

  • Long Intergenic Non-Protein Coding RNA 2381 2 3 5
  • HSALNG0091335 169
  • NONHSAG011275 94
  • NONHSAG011276 94
  • Lnc-HOXC4-4 170
  • LINC02381 2
  • SMUG1-AS1 2

External Ids for LINC02381 Gene

Previous GeneCards Identifiers for LINC02381 Gene

  • GC12P054130
  • GC12P054145

Summaries for LINC02381 Gene

GeneCards Summary for LINC02381 Gene

LINC02381 (Long Intergenic Non-Protein Coding RNA 2381) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02381 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02381 Gene

Genomics for LINC02381 Gene

GeneHancer (GH) Regulatory Elements for LINC02381 Gene

Promoters and enhancers for LINC02381 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J054125 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +1.1 1134 3.2 ZNF121 PRDM1 GLIS2 ZIC2 POLR2A ZBTB8A PRDM10 ZNF629 PATZ1 ZNF501 FAM242C LINC02381 ENSG00000260470 FLJ12825 SMUG1-AS1 SMUG1
GH12J054124 Enhancer 0.2 Ensembl 750.6 -1.9 -1869 0.4 FAM242C LINC02381 FLJ12825 LOC100240734 SMUG1
GH12J054126 Enhancer 0.2 Ensembl 750.6 -1.4 -1369 0.2 FAM242C LINC02381 LOC100240734 SMUG1
GH12J053498 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.3 -625.5 -625464 5 SIN3A SP1 SIX5 ZBTB6 RBPJ POLR2A HDAC2 ATF1 FOS CREB1 MAP3K12 TARBP2 ENSG00000270175 lnc-NPFF-4 KRT1 ZNF740 ATF7 HNRNPA1 AAAS ENSG00000258344
GH12J054277 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.4 +158.3 158260 13.6 FOXK2 E2F8 SIN3A ZBTB40 SP1 CTCF ZBTB6 MLX SMARCE1 RBPJ HNRNPA1 CBX5 NONHSAG011287.2 lnc-COPZ1-3 SP1 PCBP2 ATF7 ENSG00000258344 MAP3K12 AAAS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02381 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02381 Gene

Genomic Locations for LINC02381 Gene
chr12:54,126,070-54,147,485
(GRCh38/hg38)
Size:
21,416 bases
Orientation:
Plus strand
chr12:54,519,855-54,526,627
(GRCh37/hg19)
Size:
6,773 bases
Orientation:
Plus strand

Genomic View for LINC02381 Gene

Genes around LINC02381 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02381 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02381 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02381 Gene

Proteins for LINC02381 Gene

Post-translational modifications for LINC02381 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02381 Gene

Domains & Families for LINC02381 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02381 Gene

Function for LINC02381 Gene

Phenotypes From GWAS Catalog for LINC02381 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02381 Gene

Localization for LINC02381 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02381 Gene

Pathways & Interactions for LINC02381 Gene

PathCards logo

SuperPathways for LINC02381 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02381 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02381 Gene

Drugs & Compounds for LINC02381 Gene

No Compound Related Data Available

Transcripts for LINC02381 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02381 Gene

No ASD Table

Relevant External Links for LINC02381 Gene

GeneLoc Exon Structure for
LINC02381
ECgene alternative splicing isoforms for
LINC02381

Expression for LINC02381 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02381 Gene

Orthologs for LINC02381 Gene

Evolution for LINC02381 Gene

ENSEMBL:
Gene Tree for LINC02381 (if available)
TreeFam:
Gene Tree for LINC02381 (if available)

No data available for Orthologs for LINC02381 Gene

Paralogs for LINC02381 Gene

No data available for Paralogs for LINC02381 Gene

Variants for LINC02381 Gene

Sequence variations from dbSNP and Humsavar for LINC02381 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000465698 -- 54,124,684(+) C/A upstream_transcript_variant
rs1000508548 -- 54,129,602(+) G/A intron_variant
rs1000580282 -- 54,129,335(+) T/A intron_variant
rs1001173520 -- 54,132,971(+) G/T downstream_transcript_variant
rs1001253634 -- 54,132,672(+) A/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02381 Gene

Variant ID Type Subtype PubMed ID
esv1009650 CNV gain 20482838
esv26073 CNV gain 19812545
esv2759900 CNV gain+loss 17122850
nsv428282 CNV gain 18775914
nsv832418 CNV loss 17160897
nsv832419 CNV loss 17160897
nsv973072 CNV duplication 23825009

Additional Variant Information for LINC02381 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02381

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02381 Gene

Disorders for LINC02381 Gene

Additional Disease Information for LINC02381

No disorders were found for LINC02381 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02381 Gene

Publications for LINC02381 Gene

  1. Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis. (PMID: 28900495) Tian X … Fang JY (Journal of Cancer 2017) 2 3 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 56

Products for LINC02381 Gene

Sources for LINC02381 Gene