Aliases for LINC02381 Gene

Subcategory (RNA class) for LINC02381 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02381 Gene

  • Long Intergenic Non-Protein Coding RNA 2381 2 3 5
  • LINC02381 2 5
  • NONHSAG011275.2 91
  • NONHSAG011276.2 91
  • HSALNG0091335 164
  • Lnc-HOXC4-4 165
  • LOC400043 2

External Ids for LINC02381 Gene

Previous GeneCards Identifiers for LINC02381 Gene

  • GC12P054130
  • GC12P054145
  • GC12P054155
  • GC12P054177

Summaries for LINC02381 Gene

GeneCards Summary for LINC02381 Gene

LINC02381 (Long Intergenic Non-Protein Coding RNA 2381) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02381 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02381 Gene

Genomics for LINC02381 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02381 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J054125 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +1.1 1134 3.2 ZNF629 PRDM10 ZNF692 PRDM1 ZIC2 PATZ1 ZNF501 EZH2 ZNF600 ZNF341 FAM242C LINC02381 MAP3K12 CBX5 ENSG00000260470 FLJ12825 SMUG1-AS1 SMUG1
GH12J054124 Enhancer 0.3 Ensembl 600.7 -1.9 -1869 0.4 EZH2 FAM242C LINC02381 FLJ12825 LOC100240734 SMUG1 HOXC4 HOXC5
GH12J054126 Enhancer 0.3 Ensembl 600.7 -1.4 -1369 0.2 EZH2 FAM242C LINC02381 LOC100240734 SMUG1 HOXC4 HOXC5
GH12J053725 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 10.8 -399.1 -399100 3.3 SP1 CREB1 ZNF629 PRDM10 TFE3 SIX5 LEF1 IKZF1 SMAD2 JUND CALCOCO1 LOC105369774 lnc-ATP5MC2-2 lnc-HOXC13-2 LINC02381 PFDN5 IGFBP6 HOXC4 HNRNPA1 ATP5MC2
GH12J054497 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 4.7 +372.2 372231 2.6 SP1 POLR2A FOS JUND ZNF143 PKNOX1 MTA1 SMAD5 ZNF24 TRIM22 NCKAP1L MAP3K12 CBX5 PHC1P1 ENSG00000258344 LINC02381 MN309564 PDE1B ENSG00000258137
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02381 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02381 Gene

Genomic Locations for LINC02381 Gene
chr12:54,126,070-54,152,739
(GRCh38/hg38)
Size:
26,670 bases
Orientation:
Plus strand
chr12:54,519,855-54,526,627
(GRCh37/hg19)
Size:
6,773 bases
Orientation:
Plus strand

Genomic View for LINC02381 Gene

Genes around LINC02381 on UCSC Golden Path with GeneCards custom track
LINC02381 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02381 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02381 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02381 Gene

Proteins for LINC02381 Gene

Post-translational modifications for LINC02381 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02381 Gene

Domains & Families for LINC02381 Gene

Gene Families for LINC02381 Gene

genes like me logo Genes that share domains with LINC02381: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02381 Gene

Function for LINC02381 Gene

Phenotypes From GWAS Catalog for LINC02381 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02381 Gene

Localization for LINC02381 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02381 Gene

Pathways & Interactions for LINC02381 Gene

PathCards logo

SuperPathways for LINC02381 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02381 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02381 Gene

Drugs & Compounds for LINC02381 Gene

No Compound Related Data Available

Transcripts for LINC02381 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02381 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00009C5FF5_9606 lncRNA 1341 3

Ensembl: ENST00000635070 (view in UCSC) ,

LncBook: HSALNT0189499,

LNCipedia: lnc-HOXC4-4:8,

URS00009C5FCA_9606 lncRNA 1734 2

Ensembl: ENST00000634796 (view in UCSC) ,

LNCipedia: lnc-HOXC4-4:9,

URS000075A06D_9606 lncRNA 1395 2

HGNC: 53304,

RefSeq: NR_026656,

URS000053CA43_9606 lncRNA 1369 2

Ensembl: ENST00000508564 (view in UCSC) ,

LNCipedia: lnc-HOXC4-4:7,

URS0000E8822B_9606 lncRNA 2792 1

Ensembl: ENST00000652305 (view in UCSC) ,

LINC02381 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02381 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02381 Gene

No ASD Table

Relevant External Links for LINC02381 Gene

GeneLoc Exon Structure for
LINC02381

Expression for LINC02381 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02381

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02381 Gene

Orthologs for LINC02381 Gene

Evolution for LINC02381 Gene

ENSEMBL:
Gene Tree for LINC02381 (if available)
TreeFam:
Gene Tree for LINC02381 (if available)

No data available for Orthologs for LINC02381 Gene

Paralogs for LINC02381 Gene

No data available for Paralogs for LINC02381 Gene

Variants for LINC02381 Gene

Additional dbSNP identifiers (rs#s) for LINC02381 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02381 Gene

Variant ID Type Subtype PubMed ID
esv1009650 CNV gain 20482838
esv26073 CNV gain 19812545
esv2759900 CNV gain+loss 17122850
nsv428282 CNV gain 18775914
nsv832418 CNV loss 17160897
nsv832419 CNV loss 17160897
nsv973072 CNV duplication 23825009

Additional Variant Information for LINC02381 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02381

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02381 Gene

Disorders for LINC02381 Gene

No disorders were found for LINC02381 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02381 Gene

Publications for LINC02381 Gene

  1. Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis. (PMID: 28900495) Tian X … Fang JY (Journal of Cancer 2017) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for LINC02381 Gene

Sources for LINC02381 Gene