Aliases for LINC02372 Gene

Subcategory (RNA class) for LINC02372 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC02372 Gene

  • Long Intergenic Non-Protein Coding RNA 2372 2 3 5
  • LINC02372 2 170
  • NONHSAG012696 94
  • HSALNG0094970 169

External Ids for LINC02372 Gene

Summaries for LINC02372 Gene

GeneCards Summary for LINC02372 Gene

LINC02372 (Long Intergenic Non-Protein Coding RNA 2372) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02372 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02372 Gene

Genomics for LINC02372 Gene

GeneHancer (GH) Regulatory Elements for LINC02372 Gene

Promoters and enhancers for LINC02372 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J126874 Enhancer 0.8 Ensembl ENCODE 750.6 +0.0 25 0.6 CTCF CC2D1A ELF1 L3MBTL2 RAD21 GTF2F1 PRDM1 ARID2 REST ARNT ENSG00000256286 LINC02372 LOC105370061 ENSG00000255923
GH12J126870 Enhancer 0.7 Ensembl 0.6 +4.5 4524 0.4 CC2D1A SMARCA4 EGR1 IKZF1 HDAC1 LEF1 SOX6 PHB2 FOXK2 HDAC2 LINC02372 ENSG00000255923
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02372 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02372 Gene

Genomic Locations for LINC02372 Gene
chr12:126,869,010-126,874,725
(GRCh38/hg38)
Size:
5,716 bases
Orientation:
Minus strand
chr12:127,354,036-127,359,236
(GRCh37/hg19)
Size:
5,201 bases
Orientation:
Minus strand

Genomic View for LINC02372 Gene

Genes around LINC02372 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02372 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02372 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02372 Gene

Proteins for LINC02372 Gene

Post-translational modifications for LINC02372 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02372 Gene

Domains & Families for LINC02372 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02372 Gene

Function for LINC02372 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02372 Gene

Localization for LINC02372 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02372 Gene

Pathways & Interactions for LINC02372 Gene

PathCards logo

SuperPathways for LINC02372 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02372 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02372 Gene

Drugs & Compounds for LINC02372 Gene

No Compound Related Data Available

Transcripts for LINC02372 Gene

mRNA/cDNA for LINC02372 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(12) RNACentral transcripts :
(9) LNCipedia transcripts :
(4) LncBook transcripts :
(7) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02372 Gene

No ASD Table

Relevant External Links for LINC02372 Gene

GeneLoc Exon Structure for
LINC02372
ECgene alternative splicing isoforms for
LINC02372

Expression for LINC02372 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02372 Gene

Orthologs for LINC02372 Gene

Evolution for LINC02372 Gene

ENSEMBL:
Gene Tree for LINC02372 (if available)
TreeFam:
Gene Tree for LINC02372 (if available)

No data available for Orthologs for LINC02372 Gene

Paralogs for LINC02372 Gene

No data available for Paralogs for LINC02372 Gene

Variants for LINC02372 Gene

Sequence variations from dbSNP and Humsavar for LINC02372 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000707953 -- 126,875,540(-) T/A upstream_transcript_variant
rs1001024699 -- 126,871,308(-) A/G intron_variant
rs1001043837 -- 126,875,375(-) G/A upstream_transcript_variant
rs1001205252 -- 126,876,325(-) C/T upstream_transcript_variant
rs1001656326 -- 126,876,491(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02372 Gene

Variant ID Type Subtype PubMed ID
dgv1573n100 CNV gain 25217958
esv3631091 CNV loss 21293372
nsv1040369 CNV loss 25217958
nsv1043188 CNV gain 25217958
nsv509487 CNV insertion 20534489
nsv560620 CNV gain 21841781
nsv832542 CNV gain+loss 17160897
nsv9007 CNV loss 18304495

Additional Variant Information for LINC02372 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02372

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02372 Gene

Disorders for LINC02372 Gene

Additional Disease Information for LINC02372

No disorders were found for LINC02372 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02372 Gene

Publications for LINC02372 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LINC02372 Gene

Products for LINC02372 Gene

Sources for LINC02372 Gene