Aliases for LINC02359 Gene

Data sources for LINC02359 Gene:

RNA type for LINC02359 Gene

lncRNA

Aliases for LINC02359 Gene

External Ids for LINC02359 Gene

Summaries for LINC02359 Gene

GeneCards Summary for LINC02359 Gene

LINC02359 (Long Intergenic Non-Protein Coding RNA 2359) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02359 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02359 Gene

Genomics for LINC02359 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02359 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J126093 Enhancer 0.6 FANTOM5 250.7 0.0 -39 0.2 SIX5 ETS1 ZNF217 THAP11 HCFC1 USF2 ZNF143 RAD51 NFYC SP1 HSALNG0094924 LINC02359 LOC107984449 TMEM132B
GH12J126095 Promoter 0.6 EPDnew 250.7 +1.8 1840 0.1 ZNF143 USF2 USF1 HSALNG0094924 LINC02359 ENSG00000280364 HSALNG0094926 TMEM132B LOC107984449
GH12J126108 Enhancer 0.3 ENCODE 0.4 +14.3 14315 0.1 EZH2 ENSG00000280364 HSALNG0094926 NONHSAG012676.2 LINC02359 TMEM132B LOC107984449
GH12J126156 Enhancer 0.4 ENCODE 0.2 +62.8 62845 0.2 TOE1 USF2 USF1 lnc-DHX37-5 LOC107984447 ENSG00000286386 LINC02359 LOC107984449 TMEM132B
GH12J126157 Enhancer 0.3 Ensembl 0.2 +63.6 63596 0.6 CEBPB lnc-DHX37-5 LOC107984447 ENSG00000286386 LINC02359 LOC107984449 TMEM132B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02359 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02359 Gene

Latest Assembly
chr12:126,094,105-126,177,632
(GRCh38/hg38)
Size:
83,528 bases
Orientation:
Plus strand

Previous Assembly
chr12:126,580,538-126,588,478
(GRCh37/hg19 by Entrez Gene)
Size:
7,941 bases
Orientation:
Plus strand

Genomic View for LINC02359 Gene

Genes around LINC02359 on UCSC Golden Path with GeneCards custom track
LINC02359 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02359 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02359 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02359 Gene

Proteins for LINC02359 Gene

Post-translational modifications for LINC02359 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02359 Gene

Domains & Families for LINC02359 Gene

Gene Families for LINC02359 Gene

genes like me logo Genes that share domains with LINC02359: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02359 Gene

Function for LINC02359 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02359 Gene

Localization for LINC02359 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02359 Gene

Pathways & Interactions for LINC02359 Gene

PathCards logo

SuperPathways for LINC02359 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02359 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02359 Gene

Drugs & Compounds for LINC02359 Gene

No Compound Related Data Available

Transcripts for LINC02359 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02359 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000527B33_9606 lncRNA 648 4

Ensembl: ENST00000545642 (view in UCSC) ,

LncBook: HSALNT0196753,

LNCipedia: lnc-TMEM132B-4:18,

NONCODE: NONHSAT031748.2,

URS000040AEC9_9606 lncRNA 641 4

Ensembl: ENST00000542804 (view in UCSC) ,

LncBook: HSALNT0196786,

LNCipedia: lnc-TMEM132B-4:10,

NONCODE: NONHSAT031768.2,

URS0000D63877_9606 lncRNA 5503 2

Ensembl: ENST00000643016 (view in UCSC) ,

LNCipedia: lnc-TMEM132B-4:20,

URS00008B4745_9606 lncRNA 640 2

RefSeq: NR_110053,

LNCipedia: lnc-TMEM132B-4:19,

URS0000EEE9A7_9606 lncRNA 3486 1

Ensembl: ENST00000658727 (view in UCSC) ,

LINC02359 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02359 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02359 Gene

No ASD Table

Relevant External Links for LINC02359 Gene

GeneLoc Exon Structure for
LINC02359

Expression for LINC02359 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02359 Gene

Orthologs for LINC02359 Gene

Evolution for LINC02359 Gene

ENSEMBL:
Gene Tree for LINC02359 (if available)
TreeFam:
Gene Tree for LINC02359 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02359

No data available for Orthologs for LINC02359 Gene

Paralogs for LINC02359 Gene

No data available for Paralogs for LINC02359 Gene

Variants for LINC02359 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02359 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02359 Gene

Variant ID Type Subtype PubMed ID
esv3581960 CNV gain 25503493
nsv1134275 CNV deletion 24896259

Additional Variant Information for LINC02359 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02359
Leiden Open Variation Database (LOVD)
LINC02359

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02359 Gene

Disorders for LINC02359 Gene

Additional Disease Information for LINC02359

No disorders were found for LINC02359 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02359 Gene

Publications for LINC02359 Gene

No publications were found for LINC02359 Gene.

No data available for Mastermind for LINC02359 Gene

Products for LINC02359 Gene

Sources for LINC02359 Gene