Aliases for LINC02347 Gene

Data sources for LINC02347 Gene:

RNA type for LINC02347 Gene

lncRNA

Aliases for LINC02347 Gene

External Ids for LINC02347 Gene

Previous GeneCards Identifiers for LINC02347 Gene

  • GC12P126443
  • GC12P126406
  • GC12P126198

Summaries for LINC02347 Gene

GeneCards Summary for LINC02347 Gene

LINC02347 (Long Intergenic Non-Protein Coding RNA 2347) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02347 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02347 Gene

Genomics for LINC02347 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02347 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J126454 Enhancer 0.2 Ensembl 13 +15.8 15764 1.2 piR-30876-031 LINC02347 lnc-DHX37-24 HSALNG0094945 LOC107984449
GH12J126482 Enhancer 0.5 Ensembl 0.3 +44.3 44334 1.7 JUND BATF JUNB POLR2A FOS EP300 lnc-TMEM132B-17 HSALNG0094949 LINC02347 LOC107984449
GH12J126480 Enhancer 0.4 Ensembl ENCODE 0.3 +41.7 41664 1 KDM1A lnc-TMEM132B-17 FAM32EP LINC02347 LOC107984449
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02347 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02347 Gene

Latest Assembly
chr12:126,438,837-126,510,160
(GRCh38/hg38)
Size:
71,324 bases
Orientation:
Plus strand

Previous Assembly
chr12:126,927,027-126,957,331
(GRCh37/hg19 by Entrez Gene)
Size:
30,305 bases
Orientation:
Plus strand

chr12:126,927,027-126,957,336
(GRCh37/hg19 by Ensembl)
Size:
30,310 bases
Orientation:
Plus strand

Genomic View for LINC02347 Gene

Genes around LINC02347 on UCSC Golden Path with GeneCards custom track
LINC02347 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02347 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02347 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02347 Gene

Proteins for LINC02347 Gene

Post-translational modifications for LINC02347 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02347 Gene

Domains & Families for LINC02347 Gene

Gene Families for LINC02347 Gene

genes like me logo Genes that share domains with LINC02347: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02347 Gene

Function for LINC02347 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02347 Gene

Localization for LINC02347 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02347 Gene

Pathways & Interactions for LINC02347 Gene

PathCards logo

SuperPathways for LINC02347 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02347 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02347 Gene

Drugs & Compounds for LINC02347 Gene

No Compound Related Data Available

Transcripts for LINC02347 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02347 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000341C27_9606 lncRNA 2470 3

Ensembl: ENST00000397346 (view in UCSC) ,

LNCipedia: LINC02347:15,

NONCODE: NONHSAT031776.2,

URS00009C3426_9606 lncRNA 1450 3

Ensembl: ENST00000540774 (view in UCSC) ,

LNCipedia: LINC02347:22,

NONCODE: NONHSAT163003.1,

URS0000430180_9606 lncRNA 747 3

Ensembl: ENST00000544759 (view in UCSC) ,

LncBook: HSALNT0196853,

LNCipedia: LINC02347:14,

URS00003BF7BC_9606 lncRNA 1813 2

Ensembl: ENST00000539969 (view in UCSC) ,

LNCipedia: LINC02347:20,

URS0000314467_9606 lncRNA 1573 2

Ensembl: ENST00000545767 (view in UCSC) ,

LNCipedia: LINC02347:19,

LINC02347 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02347 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02347 Gene

No ASD Table

Relevant External Links for LINC02347 Gene

GeneLoc Exon Structure for
LINC02347

Expression for LINC02347 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02347

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02347 Gene

Orthologs for LINC02347 Gene

Evolution for LINC02347 Gene

ENSEMBL:
Gene Tree for LINC02347 (if available)
TreeFam:
Gene Tree for LINC02347 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02347

No data available for Orthologs for LINC02347 Gene

Paralogs for LINC02347 Gene

No data available for Paralogs for LINC02347 Gene

Variants for LINC02347 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02347 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02347 Gene

Variant ID Type Subtype PubMed ID
dgv1570n100 CNV gain 25217958
esv2746595 CNV deletion 23290073
esv2746596 CNV deletion 23290073
esv275027 CNV loss 21479260
esv3347838 CNV insertion 20981092
esv3631064 CNV loss 21293372
esv3631065 CNV gain 21293372
esv3631067 CNV loss 21293372
esv3631068 CNV loss 21293372
nsv1119995 CNV deletion 24896259
nsv1119996 CNV deletion 24896259
nsv515762 CNV gain+loss 19592680
nsv560598 CNV loss 21841781

Additional Variant Information for LINC02347 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02347
Leiden Open Variation Database (LOVD)
LINC02347

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02347 Gene

Disorders for LINC02347 Gene

Additional Disease Information for LINC02347

No disorders were found for LINC02347 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02347 Gene

Publications for LINC02347 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

Products for LINC02347 Gene

Sources for LINC02347 Gene