Aliases for LINC02330 Gene

Subcategory (RNA class) for LINC02330 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LINC02330 Gene

  • Long Intergenic Non-Protein Coding RNA 2330 2 3 5
  • LINC02330 2 168
  • CTD-2007A10.1 3
  • NONHSAG015645 92

External Ids for LINC02330 Gene

Summaries for LINC02330 Gene

GeneCards Summary for LINC02330 Gene

LINC02330 (Long Intergenic Non-Protein Coding RNA 2330) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02330 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02330 Gene

Genomics for LINC02330 Gene

GeneHancer (GH) Regulatory Elements for LINC02330 Gene

Promoters and enhancers for LINC02330 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J087653 Enhancer 0.2 Ensembl 508.3 +1.7 1693 0.4 LINC02330 piR-32314-008
GH14J087565 Enhancer 0.5 Ensembl ENCODE 7.3 +88.3 88286 2.3 PRDM1 SMARCA4 ENSG00000259028 LINC02330 LINC02296 piR-32470-021
GH14J087636 Enhancer 0.3 ENCODE 0.4 +18.5 18462 0.2 SMARCA4 MNT piR-35729-020 LINC02330 LINC02296
GH14J087643 Enhancer 0.3 Ensembl 0.4 +12.2 12193 0.2 NFIB piR-35729-020 LINC02330 LINC02296
GH14J087690 Enhancer 0.4 Ensembl 0.3 -35.2 -35201 0.6 MAFF MAFK SMARCA4 LINC02330 RF00017-1642
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02330 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02330 Gene

Genomic Locations for LINC02330 Gene
chr14:87,633,875-87,655,294
(GRCh38/hg38)
Size:
21,420 bases
Orientation:
Minus strand
chr14:88,100,723-88,121,638
(GRCh37/hg19)
Size:
20,916 bases
Orientation:
Minus strand

Genomic View for LINC02330 Gene

Genes around LINC02330 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02330 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02330 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02330 Gene

Proteins for LINC02330 Gene

Post-translational modifications for LINC02330 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02330 Gene

Domains & Families for LINC02330 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02330 Gene

Function for LINC02330 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02330 Gene

Localization for LINC02330 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02330 Gene

Pathways & Interactions for LINC02330 Gene

PathCards logo

SuperPathways for LINC02330 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02330 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02330 Gene

Drugs & Compounds for LINC02330 Gene

No Compound Related Data Available

Transcripts for LINC02330 Gene

mRNA/cDNA for LINC02330 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02330 Gene

No ASD Table

Relevant External Links for LINC02330 Gene

GeneLoc Exon Structure for
LINC02330

Expression for LINC02330 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02330

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02330 Gene

Orthologs for LINC02330 Gene

Evolution for LINC02330 Gene

ENSEMBL:
Gene Tree for LINC02330 (if available)
TreeFam:
Gene Tree for LINC02330 (if available)

No data available for Orthologs for LINC02330 Gene

Paralogs for LINC02330 Gene

No data available for Paralogs for LINC02330 Gene

Variants for LINC02330 Gene

Additional dbSNP identifiers (rs#s) for LINC02330 Gene

Additional Variant Information for LINC02330 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02330

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02330 Gene

Disorders for LINC02330 Gene

Additional Disease Information for LINC02330

No disorders were found for LINC02330 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02330 Gene

Publications for LINC02330 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

Products for LINC02330 Gene

Sources for LINC02330 Gene