Aliases for LINC02325 Gene

Data sources for LINC02325 Gene:

Subcategory (RNA class) for LINC02325 Gene

lncRNA

Aliases for LINC02325 Gene

External Ids for LINC02325 Gene

Previous GeneCards Identifiers for LINC02325 Gene

  • GC14P097460

Summaries for LINC02325 Gene

GeneCards Summary for LINC02325 Gene

LINC02325 (Long Intergenic Non-Protein Coding RNA 2325) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02325 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02325 Gene

Genomics for LINC02325 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02325 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J097455 Promoter/Enhancer 1.5 EPDnew FANTOM5 Ensembl ENCODE 262.4 +39.9 39881 4.4 SIN3A YY1 BATF HNF4A PKNOX1 IKZF1 JUNB FOS LARP7 RUNX3 LINC02325 HSALNG0103565 VRK1
GH14J097467 Enhancer 0.3 Ensembl 13 +50.3 50347 0.2 MAFF MAFK LINC02325 HSALNG0103565 VRK1
GH14J097468 Enhancer 0.3 Ensembl 13 +51.1 51147 1 MAFK LINC02325 HSALNG0103565 VRK1
GH14J097442 Enhancer 0.8 Ensembl ENCODE 0.3 +24.4 24447 1.2 TRIM22 EBF1 CBFB MTA3 NR2F1 JUNB IKZF1 ATF7 IKZF2 ZNF687 LINC02325 HSALNG0103565 VRK1
GH14J097432 Enhancer 0.5 Ensembl 0.4 +15.1 15147 1 BHLHE40 IKZF1 TCF12 ATF7 MTA2 LINC02325 HSALNG0103565 VRK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02325 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02325 Gene

Latest Assembly
chr14:97,417,954-97,643,669
(GRCh38/hg38)
Size:
225,716 bases
Orientation:
Plus strand

Previous Assembly
chr14:97,925,153-98,047,720
(GRCh37/hg19 by Entrez Gene)
Size:
122,568 bases
Orientation:
Plus strand

chr14:97,925,153-98,047,938
(GRCh37/hg19 by Ensembl)
Size:
122,786 bases
Orientation:
Plus strand

Genomic View for LINC02325 Gene

Genes around LINC02325 on UCSC Golden Path with GeneCards custom track
LINC02325 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02325 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02325 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02325 Gene

Proteins for LINC02325 Gene

Post-translational modifications for LINC02325 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02325 Gene

Domains & Families for LINC02325 Gene

Gene Families for LINC02325 Gene

genes like me logo Genes that share domains with LINC02325: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02325 Gene

Function for LINC02325 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02325 Gene

Localization for LINC02325 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02325 Gene

Pathways & Interactions for LINC02325 Gene

PathCards logo

SuperPathways for LINC02325 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02325 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02325 Gene

Drugs & Compounds for LINC02325 Gene

No Compound Related Data Available

Transcripts for LINC02325 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02325 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000196EE8_9606 lncRNA 738 4

Ensembl: ENST00000554862 (view in UCSC) ,

LncBook: HSALNT0215442,

LNCipedia: LINC02325:20,

NONCODE: NONHSAT039567.2,

URS00003D5C20_9606 lncRNA 571 4

Ensembl: ENST00000554260 (view in UCSC) ,

LncBook: HSALNT0215444,

LNCipedia: LINC02325:23,

NONCODE: NONHSAT039568.2,

URS0000132073_9606 lncRNA 1118 3

Ensembl: ENST00000499910 (view in UCSC) ,

LNCipedia: LINC02325:32,

NONCODE: NONHSAT039569.2,

URS000075EF40_9606 lncRNA 520 2

RefSeq: NR_110166,

LNCipedia: LINC02325:21,

URS0000EF66B9_9606 lncRNA 1836 1

Ensembl: ENST00000671156 (view in UCSC) ,

LINC02325 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02325 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02325 Gene

No ASD Table

Relevant External Links for LINC02325 Gene

GeneLoc Exon Structure for
LINC02325

Expression for LINC02325 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02325

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02325 Gene

Orthologs for LINC02325 Gene

Evolution for LINC02325 Gene

ENSEMBL:
Gene Tree for LINC02325 (if available)
TreeFam:
Gene Tree for LINC02325 (if available)

No data available for Orthologs for LINC02325 Gene

Paralogs for LINC02325 Gene

No data available for Paralogs for LINC02325 Gene

Variants for LINC02325 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02325 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02325 Gene

Variant ID Type Subtype PubMed ID
esv2657482 CNV deletion 23128226
esv3635441 CNV gain 21293372
esv3635443 CNV gain 21293372
esv3635446 CNV loss 21293372
nsv1419 CNV deletion 18451855
nsv470665 CNV gain 18288195
nsv473273 CNV novel sequence insertion 20440878

Additional Variant Information for LINC02325 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02325

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02325 Gene

Disorders for LINC02325 Gene

Additional Disease Information for LINC02325

No disorders were found for LINC02325 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02325 Gene

Publications for LINC02325 Gene

  1. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low SK … Nakamura Y (Cancer science 2013) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for LINC02325 Gene

Sources for LINC02325 Gene