Aliases for LINC02309 Gene

Subcategory (RNA class) for LINC02309 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02309 Gene

  • Long Intergenic Non-Protein Coding RNA 2309 2 3 5
  • LINC02309 2 168
  • NONHSAG015634 92
  • HSALNG0102977 167

External Ids for LINC02309 Gene

Summaries for LINC02309 Gene

GeneCards Summary for LINC02309 Gene

LINC02309 (Long Intergenic Non-Protein Coding RNA 2309) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02309 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02309 Gene

Genomics for LINC02309 Gene

GeneHancer (GH) Regulatory Elements for LINC02309 Gene

Promoters and enhancers for LINC02309 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J086334 Enhancer 0.3 Ensembl 0.7 +2.5 2536 1.8 CEBPB LINC02309 HSALNG0102980
GH14J086404 Enhancer 0.7 Ensembl ENCODE 0.2 +73.0 73037 0.4 TCF12 TEAD4 EP300 TEAD1 CEBPB JUN JUND TCF7L2 MAFK MAFF LINC02309 HSALNG0102980
GH14J086321 Enhancer 0.3 Ensembl 0.4 -10.1 -10100 0.7 SPI1 LINC02309 ENSG00000286582
GH14J086300 Enhancer 0.3 Ensembl 0.3 -31.5 -31463 0.2 POLR2A SMARCA4 ENSG00000286582 LINC02309
GH14J086359 Enhancer 0.3 Ensembl 0.3 +28.3 28337 0.2 SPI1 LINC02309 HSALNG0102980
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02309 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02309 Gene

Genomic Locations for LINC02309 Gene
chr14:86,331,564-86,401,285
(GRCh38/hg38)
Size:
69,722 bases
Orientation:
Plus strand
chr14:86,798,720-86,867,629
(GRCh37/hg19)
Size:
68,910 bases
Orientation:
Plus strand

Genomic View for LINC02309 Gene

Genes around LINC02309 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02309 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02309 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02309 Gene

Proteins for LINC02309 Gene

Post-translational modifications for LINC02309 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02309 Gene

Domains & Families for LINC02309 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02309 Gene

Function for LINC02309 Gene

Phenotypes From GWAS Catalog for LINC02309 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02309 Gene

Localization for LINC02309 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02309 Gene

Pathways & Interactions for LINC02309 Gene

PathCards logo

SuperPathways for LINC02309 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02309 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02309 Gene

Drugs & Compounds for LINC02309 Gene

No Compound Related Data Available

Transcripts for LINC02309 Gene

mRNA/cDNA for LINC02309 Gene

3 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
3 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02309 Gene

No ASD Table

Relevant External Links for LINC02309 Gene

GeneLoc Exon Structure for
LINC02309

Expression for LINC02309 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02309 Gene

Orthologs for LINC02309 Gene

Evolution for LINC02309 Gene

ENSEMBL:
Gene Tree for LINC02309 (if available)
TreeFam:
Gene Tree for LINC02309 (if available)

No data available for Orthologs for LINC02309 Gene

Paralogs for LINC02309 Gene

No data available for Paralogs for LINC02309 Gene

Variants for LINC02309 Gene

Additional dbSNP identifiers (rs#s) for LINC02309 Gene

Additional Variant Information for LINC02309 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02309

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02309 Gene

Disorders for LINC02309 Gene

No disorders were found for LINC02309 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02309 Gene

Publications for LINC02309 Gene

No publications were found for LINC02309 Gene.

No data available for Mastermind for LINC02309 Gene

Products for LINC02309 Gene

Sources for LINC02309 Gene