Aliases for LINC02308 Gene

Subcategory (RNA class) for LINC02308 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02308 Gene

  • Long Intergenic Non-Protein Coding RNA 2308 2 3 5
  • LINC02308 2 168
  • NONHSAG015602 92
  • HSALNG0102798 167

External Ids for LINC02308 Gene

Summaries for LINC02308 Gene

GeneCards Summary for LINC02308 Gene

LINC02308 (Long Intergenic Non-Protein Coding RNA 2308) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02308 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02308 Gene

Genomics for LINC02308 Gene

GeneHancer (GH) Regulatory Elements for LINC02308 Gene

Promoters and enhancers for LINC02308 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J081448 Promoter/Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas 500.7 +0.5 461 2.6 ZIC2 ZNF341 ZBTB17 MEF2B POLR2A NR2F2 GATA3 EBF1 RAD21 RXRA LINC02308 STON2
GH14J081422 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 5.7 +24.4 24393 6 NRF1 GTF2E2 ZIC2 ZBTB11 AFF1 MYC CTBP1 TAF9B MXI1 ZNF341 STON2 lnc-SEL1L-11 LINC02308 DYNLL1P2
GH14J081434 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.7 +14.5 14532 3.1 EP300 NRF1 REST ZBTB10 ZBTB26 RFX1 HES1 MYC ZBTB7A CTBP1 STON2 GTF2A1 LINC02308 lnc-SEL1L-11
GH14J081398 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 4.6 +49.6 49586 4.5 ZNF217 ZSCAN5C ZIC2 POLR2A REST RFX1 MEF2C MYC EP300 CTBP1 GTF2A1 STON2 LINC02308 piR-35031-017 hsa-miR-1273e-020
GH14J081429 Enhancer 0.7 Ensembl dbSUPER 5.8 +19.6 19571 1.6 ZNF316 POLR2A NFE2 MAFG ZNF384 PRDM10 SMARCA4 RLF MAX IKZF1 LINC02308 lnc-SEL1L-11 STON2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02308 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02308 Gene

Genomic Locations for LINC02308 Gene
chr14:81,441,987-81,450,371
(GRCh38/hg38)
Size:
8,385 bases
Orientation:
Minus strand
chr14:81,908,331-81,916,501
(GRCh37/hg19)
Size:
8,171 bases
Orientation:
Minus strand

Genomic View for LINC02308 Gene

Genes around LINC02308 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02308 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02308 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02308 Gene

Proteins for LINC02308 Gene

Post-translational modifications for LINC02308 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02308 Gene

Domains & Families for LINC02308 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02308 Gene

Function for LINC02308 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02308 Gene

Localization for LINC02308 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02308 Gene

Pathways & Interactions for LINC02308 Gene

PathCards logo

SuperPathways for LINC02308 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02308 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02308 Gene

Drugs & Compounds for LINC02308 Gene

No Compound Related Data Available

Transcripts for LINC02308 Gene

mRNA/cDNA for LINC02308 Gene

8 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02308 Gene

No ASD Table

Relevant External Links for LINC02308 Gene

GeneLoc Exon Structure for
LINC02308

Expression for LINC02308 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02308 Gene

Orthologs for LINC02308 Gene

Evolution for LINC02308 Gene

ENSEMBL:
Gene Tree for LINC02308 (if available)
TreeFam:
Gene Tree for LINC02308 (if available)

No data available for Orthologs for LINC02308 Gene

Paralogs for LINC02308 Gene

No data available for Paralogs for LINC02308 Gene

Variants for LINC02308 Gene

Additional dbSNP identifiers (rs#s) for LINC02308 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02308 Gene

Variant ID Type Subtype PubMed ID
esv3635076 CNV gain 21293372

Additional Variant Information for LINC02308 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02308

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02308 Gene

Disorders for LINC02308 Gene

Additional Disease Information for LINC02308

No disorders were found for LINC02308 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02308 Gene

Publications for LINC02308 Gene

No publications were found for LINC02308 Gene.

No data available for Mastermind for LINC02308 Gene

Products for LINC02308 Gene

Sources for LINC02308 Gene