Aliases for LINC02299 Gene

Data sources for LINC02299 Gene:

Subcategory (RNA class) for LINC02299 Gene

lncRNA

Aliases for LINC02299 Gene

External Ids for LINC02299 Gene

Summaries for LINC02299 Gene

GeneCards Summary for LINC02299 Gene

LINC02299 (Long Intergenic Non-Protein Coding RNA 2299) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02299 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02299 Gene

Genomics for LINC02299 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02299 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J096741 Promoter 1.6 EPDnew Ensembl CraniofacialAtlas 250.4 +8.7 8736 1 ZBTB10 CTCF ZIC2 ZNF610 SIN3A REST TRIM22 SMC3 GABPB1 RAD21 LINC02299 VRK1 piR-59962 lnc-ATG2B-18 ENSG00000287772 PAPOLA
GH14J096738 Promoter 0.8 UCNEbase Ensembl 0.4 +5.9 5857 0.4 SPI1 LINC02299 piR-59962 ENSG00000287772 lnc-ATG2B-18 VRK1 PAPOLA
GH14J096754 Enhancer 0.8 Ensembl ENCODE 0.3 +22.2 22230 1.8 SIX5 IKZF1 ZIC2 THAP11 HCFC1 YY1 EHMT2 ZBTB33 ZNF143 NR2F6 ENSG00000287772 lnc-ATG2B-18 LINC02299 piR-59962 VRK1 PAPOLA
GH14J096763 Promoter 0.8 CraniofacialAtlas 0.3 +29.8 29799 0.2 IKZF1 ELF1 THAP11 ZFP91 NFE2 FOXM1 SP7 L3MBTL2 HLF ZNF680 lnc-ATG2B-18 piR-34163-010 LINC02299 VRK1 PAPOLA
GH14J096735 Enhancer 0.3 Ensembl 0.7 +3.0 3014 0.4 ZIC2 PRDM10 LINC02299 piR-59962 ENSG00000287772 lnc-ATG2B-18 VRK1 PAPOLA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02299 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02299 Gene

Latest Assembly
chr14:96,732,765-96,793,084
(GRCh38/hg38)
Size:
60,320 bases
Orientation:
Plus strand

Previous Assembly
chr14:97,207,528-97,256,950
(GRCh37/hg19 by Entrez Gene)
Size:
49,423 bases
Orientation:
Plus strand

chr14:97,207,528-97,256,950
(GRCh37/hg19 by Ensembl)
Size:
49,423 bases
Orientation:
Plus strand

Genomic View for LINC02299 Gene

Genes around LINC02299 on UCSC Golden Path with GeneCards custom track
LINC02299 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02299 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02299 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02299 Gene

Proteins for LINC02299 Gene

Post-translational modifications for LINC02299 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02299 Gene

Domains & Families for LINC02299 Gene

Gene Families for LINC02299 Gene

genes like me logo Genes that share domains with LINC02299: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02299 Gene

Function for LINC02299 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02299 Gene

Localization for LINC02299 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02299 Gene

Pathways & Interactions for LINC02299 Gene

PathCards logo

SuperPathways for LINC02299 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02299 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02299 Gene

Drugs & Compounds for LINC02299 Gene

No Compound Related Data Available

Transcripts for LINC02299 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02299 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000054AD9E_9606 lncRNA 430 5

RefSeq: NR_146552,

Ensembl: ENST00000556669 (view in UCSC) ,

LncBook: HSALNT0215375,

LNCipedia: LINC02299:4,

NONCODE: NONHSAT039551.2,

URS0000EEC02D_9606 lncRNA 1175 1

Ensembl: ENST00000664687 (view in UCSC) ,

URS0000EEC2D7_9606 lncRNA 1173 1

Ensembl: ENST00000654843 (view in UCSC) ,

URS0000DB92D6_9606 lncRNA 587 1

Ensembl: ENST00000650059 (view in UCSC) ,

URS00008BE500_9606 lncRNA 411 3

LncBook: HSALNT0215377,

LNCipedia: LINC02299:5,

NONCODE: NONHSAT039552.2,

LINC02299 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02299 Gene

No ASD Table

Relevant External Links for LINC02299 Gene

GeneLoc Exon Structure for
LINC02299

No data available for mRNA/cDNA for LINC02299 Gene

Expression for LINC02299 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02299 Gene

Orthologs for LINC02299 Gene

Evolution for LINC02299 Gene

ENSEMBL:
Gene Tree for LINC02299 (if available)
TreeFam:
Gene Tree for LINC02299 (if available)

No data available for Orthologs for LINC02299 Gene

Paralogs for LINC02299 Gene

No data available for Paralogs for LINC02299 Gene

Variants for LINC02299 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02299 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02299 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02299

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02299 Gene

Disorders for LINC02299 Gene

Additional Disease Information for LINC02299

No disorders were found for LINC02299 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02299 Gene

Publications for LINC02299 Gene

No publications were found for LINC02299 Gene.

Products for LINC02299 Gene

Sources for LINC02299 Gene