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Aliases for LINC02299 Gene
Subcategory (RNA class) for LINC02299 Gene
lncRNA
Aliases for LINC02299 Gene
External Ids for LINC02299 Gene
- HGNC: 53218
- NCBI Entrez Gene: 105370646
- Ensembl: ENSG00000258979
Summaries for LINC02299 Gene
GeneCards Summary for LINC02299 Gene
LINC02299 (Long Intergenic Non-Protein Coding RNA 2299) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC02299 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02299 Gene
Genomics for LINC02299 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC02299 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH14J096741 | Promoter | 1.6 | EPDnew Ensembl CraniofacialAtlas | 250.4 | +8.7 | 8736 | 1 | ZBTB10 CTCF ZIC2 ZNF610 SIN3A REST TRIM22 SMC3 GABPB1 RAD21 | LINC02299 VRK1 piR-59962 lnc-ATG2B-18 ENSG00000287772 PAPOLA | |
| GH14J096738 | Promoter | 0.8 | UCNEbase Ensembl | 0.4 | +5.9 | 5857 | 0.4 | SPI1 | LINC02299 piR-59962 ENSG00000287772 lnc-ATG2B-18 VRK1 PAPOLA | |
| GH14J096754 | Enhancer | 0.8 | Ensembl ENCODE | 0.3 | +22.2 | 22230 | 1.8 | SIX5 IKZF1 ZIC2 THAP11 HCFC1 YY1 EHMT2 ZBTB33 ZNF143 NR2F6 | ENSG00000287772 lnc-ATG2B-18 LINC02299 piR-59962 VRK1 PAPOLA | |
| GH14J096763 | Promoter | 0.8 | CraniofacialAtlas | 0.3 | +29.8 | 29799 | 0.2 | IKZF1 ELF1 THAP11 ZFP91 NFE2 FOXM1 SP7 L3MBTL2 HLF ZNF680 | lnc-ATG2B-18 piR-34163-010 LINC02299 VRK1 PAPOLA | |
| GH14J096735 | Enhancer | 0.3 | Ensembl | 0.7 | +3.0 | 3014 | 0.4 | ZIC2 PRDM10 | LINC02299 piR-59962 ENSG00000287772 lnc-ATG2B-18 VRK1 PAPOLA |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02299 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC02299 Gene
Latest Assembly
- chr14:96,732,765-96,793,084
- (GRCh38/hg38)
- Size:
- 60,320 bases
- Orientation:
- Plus strand
Previous Assembly
- chr14:97,207,528-97,256,950
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 49,423 bases
- Orientation:
- Plus strand
- chr14:97,207,528-97,256,950
- (GRCh37/hg19 by Ensembl)
- Size:
- 49,423 bases
- Orientation:
- Plus strand
Genomic View for LINC02299 Gene
Genes around LINC02299 on UCSC Golden Path with GeneCards custom track
LINC02299 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 14q32.2 by HGNC
- 14q32.2 by Entrez Gene
- 14q32.2 by Ensembl
LINC02299 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC02299 Gene
Proteins for LINC02299 Gene
Post-translational modifications for LINC02299 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC02299 Gene
Domains & Families for LINC02299 Gene
Gene Families for LINC02299 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02299 Gene
Function for LINC02299 Gene
Phenotypes From GWAS Catalog for LINC02299 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02299 Gene
Localization for LINC02299 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02299 Gene
Transcripts for LINC02299 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02299 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000054AD9E_9606 | lncRNA | 430 | 5 |
RefSeq: NR_146552, Ensembl: ENST00000556669 (view in UCSC) , LncBook: HSALNT0215375, LNCipedia: LINC02299:4, NONCODE: NONHSAT039551.2, |
| URS0000EEC02D_9606 | lncRNA | 1175 | 1 |
Ensembl: ENST00000664687 (view in UCSC) , |
| URS0000EEC2D7_9606 | lncRNA | 1173 | 1 |
Ensembl: ENST00000654843 (view in UCSC) , |
| URS0000DB92D6_9606 | lncRNA | 587 | 1 |
Ensembl: ENST00000650059 (view in UCSC) , |
| URS00008BE500_9606 | lncRNA | 411 | 3 |
LncBook: HSALNT0215377, LNCipedia: LINC02299:5, NONCODE: NONHSAT039552.2, |
LINC02299 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC02299 Gene
- GeneLoc Exon Structure for
- LINC02299
No data available for mRNA/cDNA for LINC02299 Gene
Expression for LINC02299 Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02299 Gene
Orthologs for LINC02299 Gene
No data available for Orthologs for LINC02299 Gene
Paralogs for LINC02299 Gene
No data available for Paralogs for LINC02299 Gene
Variants for LINC02299 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC02299 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC02299
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02299 Gene
Disorders for LINC02299 Gene
Additional Disease Information for LINC02299
No disorders were found for LINC02299 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02299 Gene
Publications for LINC02299 Gene
No publications were found for LINC02299 Gene.
Products for LINC02299 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02299
- Origene Custom Protein Services for LINC02299
- Browse OriGene Inhibitory RNA Products For LINC02299
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC02299
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02299
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC02299
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC02299
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02299
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC02299
Sources for LINC02299 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB