Aliases for LINC02292 Gene

Data sources for LINC02292 Gene:

Subcategory (RNA class) for LINC02292 Gene

lncRNA

Aliases for LINC02292 Gene

External Ids for LINC02292 Gene

Summaries for LINC02292 Gene

GeneCards Summary for LINC02292 Gene

LINC02292 (Long Intergenic Non-Protein Coding RNA 2292) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02292 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02292 Gene

Genomics for LINC02292 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02292 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J095317 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +0.3 268 3.6 ZBTB10 ZIC2 ZNF610 SIN3A VEZF1 SAP130 KLF7 ZNF341 RXRA ETV4 CLMN LINC02292 DICER1
GH14J095314 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 6.4 -4.8 -4756 3 BCL11A CEBPA ZNF217 IRF4 SAP130 RXRA EBF1 CTBP1 FOXA2 ZBTB33 CLMN LINC02292 DICER1 lnc-GLRX5-5
GH14J095307 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.7 -11.0 -10982 3 RXRA ZBTB33 CTBP1 FOXA2 JUND TCF7L2 HNF4A ZNF48 FOXA1 BHLHE40 CLMN LINC02292 lnc-GLRX5-5 DICER1
GH14J095327 Enhancer 1 Ensembl ENCODE 6.2 +8.3 8318 3.2 SP1 BCL11A FEZF1 POLR2A FOXA2 IRF4 TRIM22 ZNF843 SMARCA5 PRDM6 LOC105370637 CLMN LINC02292 SYNE3
GH14J095321 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 0.7 +3.3 3288 1.7 FEZF1 MAFF RXRA HNF4A ZNF792 MAFK ZKSCAN8 CLMN LINC02292 LOC105370637 SYNE3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02292 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02292 Gene

Latest Assembly
chr14:95,319,483-95,340,207
(GRCh38/hg38)
Size:
20,725 bases
Orientation:
Plus strand

Previous Assembly
chr14:95,795,921-95,801,841
(GRCh37/hg19 by Entrez Gene)
Size:
5,921 bases
Orientation:
Plus strand

chr14:95,795,921-95,801,841
(GRCh37/hg19 by Ensembl)
Size:
5,921 bases
Orientation:
Plus strand

Genomic View for LINC02292 Gene

Genes around LINC02292 on UCSC Golden Path with GeneCards custom track
LINC02292 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02292 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02292 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02292 Gene

Proteins for LINC02292 Gene

Post-translational modifications for LINC02292 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02292 Gene

Domains & Families for LINC02292 Gene

Gene Families for LINC02292 Gene

genes like me logo Genes that share domains with LINC02292: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02292 Gene

Function for LINC02292 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02292 Gene

Localization for LINC02292 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02292 Gene

Pathways & Interactions for LINC02292 Gene

PathCards logo

SuperPathways for LINC02292 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02292 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02292 Gene

Drugs & Compounds for LINC02292 Gene

No Compound Related Data Available

Transcripts for LINC02292 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02292 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000020B26_9606 lncRNA 1701 5

RefSeq: NR_110127,

Ensembl: ENST00000554522 (view in UCSC) ,

LncBook: HSALNT0215173,

LNCipedia: LINC02292:14,

NONCODE: NONHSAT039441.2,

URS0001952D0F_9606 lncRNA 2294 1

Ensembl: ENST00000673401 (view in UCSC) ,

URS0000EF0140_9606 lncRNA 2141 1

Ensembl: ENST00000671353 (view in UCSC) ,

URS0000EED42A_9606 lncRNA 1606 1

Ensembl: ENST00000670233 (view in UCSC) ,

URS0000EEC1A1_9606 lncRNA 1459 1

Ensembl: ENST00000663706 (view in UCSC) ,

LINC02292 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02292 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02292 Gene

No ASD Table

Relevant External Links for LINC02292 Gene

GeneLoc Exon Structure for
LINC02292

Expression for LINC02292 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02292 Gene

Orthologs for LINC02292 Gene

Evolution for LINC02292 Gene

ENSEMBL:
Gene Tree for LINC02292 (if available)
TreeFam:
Gene Tree for LINC02292 (if available)

No data available for Orthologs for LINC02292 Gene

Paralogs for LINC02292 Gene

No data available for Paralogs for LINC02292 Gene

Variants for LINC02292 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02292 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02292 Gene

Variant ID Type Subtype PubMed ID
dgv675e212 CNV loss 25503493
dgv89e55 CNV gain 17911159
esv2678392 CNV deletion 23128226
esv3635400 CNV gain 21293372
esv3635401 CNV loss 21293372
nsv1042858 CNV gain 25217958
nsv565631 CNV gain 21841781

Additional Variant Information for LINC02292 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02292

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02292 Gene

Disorders for LINC02292 Gene

Additional Disease Information for LINC02292

No disorders were found for LINC02292 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02292 Gene

Publications for LINC02292 Gene

No publications were found for LINC02292 Gene.

No data available for Mastermind for LINC02292 Gene

Products for LINC02292 Gene

Sources for LINC02292 Gene