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Aliases for LINC02291 Gene

Subcategory (RNA class) for LINC02291 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02291 Gene

  • Long Intergenic Non-Protein Coding RNA 2291 2 3 5

External Ids for LINC02291 Gene

Summaries for LINC02291 Gene

GeneCards Summary for LINC02291 Gene

LINC02291 (Long Intergenic Non-Protein Coding RNA 2291) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02291 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02291 Gene

Genomics for LINC02291 Gene

GeneHancer (GH) Regulatory Elements for LINC02291 Gene

Promoters and enhancers for LINC02291 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J097687 Enhancer 0.4 Ensembl ENCODE 600.7 -1.9 -1858 1.8 LINC02291 LOC105370651 LOC105370650
GH14J097685 Enhancer 0.4 Ensembl ENCODE 600.7 +0.6 565 1.4 LINC02291 LOC105370650
GH14J097688 Enhancer 0.2 Ensembl 600.7 -0.4 -443 0.2 LINC02291 LOC105370651 LOC105370650
GH14J097701 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.4 -19.4 -19402 8.3 MAFK CREM MLLT1 RAD21 IKZF1 BACH1 IKZF2 NFE2L2 ZNF316 CBFB LOC105370651 LINC01550 LINC02291
GH14J097697 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -11.3 -11343 1.2 RELA CREM IKZF1 IKZF2 EED RUNX3 BCL11A NBN EBF1 TARDBP LOC105370651 LINC02291
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02291 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02291 Gene

Genomic Locations for LINC02291 Gene
chr14:97,632,647-97,686,658
(GRCh38/hg38)
Size:
54,012 bases
Orientation:
Minus strand
chr14:98,098,984-98,152,995
(GRCh37/hg19)
Size:
54,012 bases
Orientation:
Minus strand

Genomic View for LINC02291 Gene

Genes around LINC02291 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02291 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02291 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02291 Gene

Proteins for LINC02291 Gene

Post-translational modifications for LINC02291 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02291 Gene

Domains & Families for LINC02291 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02291 Gene

Function for LINC02291 Gene

Phenotypes From GWAS Catalog for LINC02291 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02291 Gene

Localization for LINC02291 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02291 Gene

Pathways & Interactions for LINC02291 Gene

PathCards logo

SuperPathways for LINC02291 Gene

No Data Available

Interacting Proteins for LINC02291 Gene

Gene Ontology (GO) - Biological Process for LINC02291 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02291 Gene

Drugs & Compounds for LINC02291 Gene

No Compound Related Data Available

Transcripts for LINC02291 Gene

mRNA/cDNA for LINC02291 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02291 Gene

No ASD Table

Relevant External Links for LINC02291 Gene

GeneLoc Exon Structure for
LINC02291
ECgene alternative splicing isoforms for
LINC02291

Expression for LINC02291 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02291 Gene

Orthologs for LINC02291 Gene

Evolution for LINC02291 Gene

ENSEMBL:
Gene Tree for LINC02291 (if available)
TreeFam:
Gene Tree for LINC02291 (if available)

No data available for Orthologs for LINC02291 Gene

Paralogs for LINC02291 Gene

No data available for Paralogs for LINC02291 Gene

Variants for LINC02291 Gene

Sequence variations from dbSNP and Humsavar for LINC02291 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000037605 -- 97,658,202(-) G/A intron_variant
rs1000148589 -- 97,675,668(-) T/A/C intron_variant
rs1000166215 -- 97,638,504(-) A/C intron_variant
rs1000227778 -- 97,672,469(-) T/G intron_variant
rs1000246100 -- 97,672,709(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02291 Gene

Variant ID Type Subtype PubMed ID
dgv1965n100 CNV loss 25217958
dgv1966n100 CNV loss 25217958
esv2661049 CNV deletion 23128226
esv2760011 CNV loss 17122850
esv2760326 CNV loss 21179565
esv3635443 CNV gain 21293372
esv3635448 CNV loss 21293372
esv3635449 CNV loss 21293372
nsv1042217 CNV gain 25217958
nsv1048157 CNV gain 25217958
nsv1115977 CNV insertion 24896259
nsv1160202 CNV duplication 26073780
nsv436190 CNV deletion 17901297
nsv470665 CNV gain 18288195
nsv515499 CNV loss 19592680
nsv521281 CNV loss 19592680
nsv528098 CNV gain 19592680
nsv565657 CNV loss 21841781
nsv9166 CNV loss 18304495

Additional Variant Information for LINC02291 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02291

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02291 Gene

Disorders for LINC02291 Gene

Additional Disease Information for LINC02291

No disorders were found for LINC02291 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02291 Gene

Publications for LINC02291 Gene

  1. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low SK … Nakamura Y (Cancer science 2013) 3 58

No data available for External Links for LINC02291 Gene

Products for LINC02291 Gene

Sources for LINC02291 Gene

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