Aliases for LINC02279 Gene

Data sources for LINC02279 Gene:

Subcategory (RNA class) for LINC02279 Gene

lncRNA

Aliases for LINC02279 Gene

External Ids for LINC02279 Gene

Previous GeneCards Identifiers for LINC02279 Gene

  • GC14M094961

Summaries for LINC02279 Gene

GeneCards Summary for LINC02279 Gene

LINC02279 (Long Intergenic Non-Protein Coding RNA 2279) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02279 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02279 Gene

Genomics for LINC02279 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02279 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J095010 Enhancer 0.5 CraniofacialAtlas 7 -47.2 -47189 1.4 ZNF571 ZNF366 MTA3 ZNF266 ZNF512 ZNF512B ZNF670 SNHG10 SCARNA13 DICER1 LINC02279 HSALNG0103410 HSALNG0103408 GSC
GH14J094904 Enhancer 0.6 Ensembl ENCODE 5.4 +59.1 59075 1.8 RAD21 SMC3 NANOG CTCF LINC02279 ENSG00000274379 HSALNG0103393 GSC DICER1
GH14J094962 Enhancer 0.3 Ensembl 0.7 +2.1 2074 1 ZBTB40 ELF4 LINC02279 piR-46243 GSC DICER1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02279 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02279 Gene

Latest Assembly
chr14:94,960,276-94,963,775
(GRCh38/hg38)
Size:
3,500 bases
Orientation:
Minus strand

Previous Assembly
chr14:95,426,614-95,429,313
(GRCh37/hg19 by Ensembl)
Size:
2,700 bases
Orientation:
Minus strand

Genomic View for LINC02279 Gene

Genes around LINC02279 on UCSC Golden Path with GeneCards custom track
LINC02279 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02279 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02279 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02279 Gene

Proteins for LINC02279 Gene

Post-translational modifications for LINC02279 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02279 Gene

Domains & Families for LINC02279 Gene

Gene Families for LINC02279 Gene

genes like me logo Genes that share domains with LINC02279: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02279 Gene

Function for LINC02279 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02279 Gene

Localization for LINC02279 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02279 Gene

Pathways & Interactions for LINC02279 Gene

PathCards logo

SuperPathways for LINC02279 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02279 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02279 Gene

Drugs & Compounds for LINC02279 Gene

No Compound Related Data Available

Transcripts for LINC02279 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02279 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001AFC33_9606 lncRNA 742 4

Ensembl: ENST00000553435 (view in UCSC) ,

LncBook: HSALNT0215102,

LNCipedia: LINC02279:3,

NONCODE: NONHSAT039410.2,

URS0001BF315B_9606 lncRNA 737 1

LncBook: HSALNT0215102,

LINC02279 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02279 Gene

No ASD Table

Relevant External Links for LINC02279 Gene

GeneLoc Exon Structure for
LINC02279

No data available for mRNA/cDNA for LINC02279 Gene

Expression for LINC02279 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02279 Gene

Orthologs for LINC02279 Gene

Evolution for LINC02279 Gene

ENSEMBL:
Gene Tree for LINC02279 (if available)
TreeFam:
Gene Tree for LINC02279 (if available)

No data available for Orthologs for LINC02279 Gene

Paralogs for LINC02279 Gene

No data available for Paralogs for LINC02279 Gene

Variants for LINC02279 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02279 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02279 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02279

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02279 Gene

Disorders for LINC02279 Gene

Additional Disease Information for LINC02279

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02279 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02279 Gene

Publications for LINC02279 Gene

No publications were found for LINC02279 Gene.

No data available for Mastermind for LINC02279 Gene

Products for LINC02279 Gene

Sources for LINC02279 Gene