Aliases for LINC02275 Gene

Subcategory (RNA class) for LINC02275 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02275 Gene

  • Long Intergenic Non-Protein Coding RNA 2275 2 3 5
  • LINC02275 2 5 165
  • NONHSAG039312.2 91
  • HSALNG0038496 164

External Ids for LINC02275 Gene

Summaries for LINC02275 Gene

GeneCards Summary for LINC02275 Gene

LINC02275 (Long Intergenic Non-Protein Coding RNA 2275) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02275 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02275 Gene

Genomics for LINC02275 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02275 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J169974 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 600.7 -0.1 -131 2.7 GATAD2A REST TFE3 RXRB SP1 CEBPA SCRT2 MNT SOX13 TCF7 LINC02275 MFAP3L AADAT ENSG00000249955 HPF1 MG828730-051
GH04J169975 Enhancer 0.2 ENCODE 600.7 +1.4 1439 0.2 LINC02275 lnc-CLCN3-7 MFAP3L HPF1 MG828730-051
GH04J170003 Promoter/Enhancer 1 EPDnew Ensembl dbSUPER 11.8 -28.0 -27997 0.6 ZNF316 MAFK MAFG BACH1 SPI1 EMSY MFAP3L AADAT ENSG00000249955 LINC02275 ENSG00000251200 RF00017-4453 HPF1 MG828730-051
GH04J169933 Enhancer 0.9 Ensembl ENCODE 11.7 +41.3 41306 2.5 HDAC1 SOX6 TCF12 EP300 CTBP1 NFE2 ZNF316 NCOR1 MAFG FOXM1 MFAP3L LINC02275 ENSG00000249955 AADAT piR-45035-145 ENSG00000287298 ENSG00000288003 LOC105377530 HPF1 MG828730-051
GH04J170004 Enhancer 0.7 dbSUPER 11.8 -29.4 -29404 2 PRDM10 ZNF629 TSHZ1 ZSCAN5C OSR2 ZNF580 BCL11A ZBTB17 SCRT1 WT1 RF00017-4453 MFAP3L ENSG00000249955 LINC02275 ENSG00000251200 HPF1 MG828730-051
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02275 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02275 Gene

Genomic Locations for LINC02275 Gene
chr4:169,912,554-169,975,904
(GRCh38/hg38)
Size:
63,351 bases
Orientation:
Minus strand
chr4:170,838,912-170,897,053
(GRCh37/hg19)
Size:
58,142 bases
Orientation:
Minus strand

Genomic View for LINC02275 Gene

Genes around LINC02275 on UCSC Golden Path with GeneCards custom track
LINC02275 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02275 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02275 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02275 Gene

Proteins for LINC02275 Gene

Post-translational modifications for LINC02275 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02275 Gene

Domains & Families for LINC02275 Gene

Gene Families for LINC02275 Gene

genes like me logo Genes that share domains with LINC02275: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02275 Gene

Function for LINC02275 Gene

Phenotypes From GWAS Catalog for LINC02275 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02275 Gene

Localization for LINC02275 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02275 Gene

Pathways & Interactions for LINC02275 Gene

PathCards logo

SuperPathways for LINC02275 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02275 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02275 Gene

Drugs & Compounds for LINC02275 Gene

No Compound Related Data Available

Transcripts for LINC02275 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02275 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000420EBB_9606 lncRNA 4365 4

HGNC: 53191,

RefSeq: NR_037878,

LNCipedia: LINC02275:12, LINC02275:9,

NONCODE: NONHSAT099170.2,

URS0000EF0D34_9606 lncRNA 4367 1

Ensembl: ENST00000508313 (view in UCSC) ,

URS0000EEE2DE_9606 lncRNA 1333 1

Ensembl: ENST00000669558 (view in UCSC) ,

URS0000EEFD6D_9606 lncRNA 1294 1

Ensembl: ENST00000665818 (view in UCSC) ,

URS0000EEDF28_9606 lncRNA 717 1

Ensembl: ENST00000657085 (view in UCSC) ,

LINC02275 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02275 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02275 Gene

No ASD Table

Relevant External Links for LINC02275 Gene

GeneLoc Exon Structure for
LINC02275

Expression for LINC02275 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02275

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02275 Gene

Orthologs for LINC02275 Gene

Evolution for LINC02275 Gene

ENSEMBL:
Gene Tree for LINC02275 (if available)
TreeFam:
Gene Tree for LINC02275 (if available)

No data available for Orthologs for LINC02275 Gene

Paralogs for LINC02275 Gene

No data available for Paralogs for LINC02275 Gene

Variants for LINC02275 Gene

Additional dbSNP identifiers (rs#s) for LINC02275 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02275 Gene

Variant ID Type Subtype PubMed ID
esv2159613 CNV deletion 18987734
esv2728730 CNV deletion 23290073
esv2728731 CNV deletion 23290073
esv275368 CNV loss 21479260
esv2763406 CNV loss 21179565
esv3351274 CNV insertion 20981092
nsv1020188 CNV loss 25217958
nsv520717 CNV loss 19592680
nsv830149 CNV loss 17160897

Additional Variant Information for LINC02275 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02275

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02275 Gene

Disorders for LINC02275 Gene

Additional Disease Information for LINC02275

No disorders were found for LINC02275 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02275 Gene

Publications for LINC02275 Gene

  1. Common genetic variants associated with cognitive performance identified using the proxy-phenotype method. (PMID: 25201988) Rietveld CA … Koellinger PD (Proceedings of the National Academy of Sciences of the United States of America 2014) 3
  2. A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population. (PMID: 23049088) Meng W … Malecaze F (Investigative ophthalmology & visual science 2012) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LINC02275 Gene

Products for LINC02275 Gene

Sources for LINC02275 Gene