Aliases for LINC02272 Gene

Data sources for LINC02272 Gene:

RNA type for LINC02272 Gene

lncRNA

Aliases for LINC02272 Gene

External Ids for LINC02272 Gene

Summaries for LINC02272 Gene

GeneCards Summary for LINC02272 Gene

LINC02272 (Long Intergenic Non-Protein Coding RNA 2272) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02272 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02272 Gene

Genomics for LINC02272 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02272 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J156642 Promoter/Enhancer 0.7 EPDnew Ensembl 250.7 +0.1 82 0.4 JUND EP300 ENSG00000249479 LINC02272 PDGFC CTSO
GH04J156769 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 -130.4 -130448 7.3 JUND CEBPB FEZF1 REST ZNF843 PRDM6 SPI1 ZNF664 BHLHE40 GATA2 HSALNG0038097 lnc-GLRB-9 PDGFC ENSG00000250622 ENSG00000248629 ENSG00000249479 LINC02272 HSALNG0038095 lnc-CTSO-2 CTSO
GH04J156597 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 10.9 +45.2 45237 3.3 RXRA BHLHE40 FOS SCRT2 NR2F2 ENSG00000249479 LINC02272 RNU6-582P ENSG00000249819 GRIA2 HSALNG0038085 piR-32559-330 PDGFC CTSO
GH04J156829 Enhancer 0.8 Ensembl ENCODE dbSUPER 9.9 -186.8 -186798 3.4 ATF3 SPI1 CEBPB HLF EP300 CEBPG ENSG00000249479 LINC02272 ENSG00000248629 lnc-CTSO-2 lnc-GLRB-9 HSALNG0038097 PDGFC CTSO
GH04J156614 Enhancer 0.7 Ensembl ENCODE 10.9 +27.5 27464 2.3 MAFF ZNF316 MAFK NFE2L2 MAFG JUND EP300 EMSY LINC02272 ENSG00000249479 piR-32559-331 PDGFC CTSO
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02272 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02272 Gene

Latest Assembly
chr4:156,623,025-156,642,682
(GRCh38/hg38)
Size:
19,658 bases
Orientation:
Minus strand

Previous Assembly
chr4:157,555,646-157,563,606
(GRCh37/hg19 by Ensembl)
Size:
7,961 bases
Orientation:
Minus strand

Genomic View for LINC02272 Gene

Genes around LINC02272 on UCSC Golden Path with GeneCards custom track
LINC02272 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02272 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02272 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02272 Gene

Proteins for LINC02272 Gene

Post-translational modifications for LINC02272 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02272 Gene

Domains & Families for LINC02272 Gene

Gene Families for LINC02272 Gene

genes like me logo Genes that share domains with LINC02272: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02272 Gene

Function for LINC02272 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02272 Gene

Localization for LINC02272 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02272 Gene

Pathways & Interactions for LINC02272 Gene

PathCards logo

SuperPathways for LINC02272 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02272 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02272 Gene

Drugs & Compounds for LINC02272 Gene

No Compound Related Data Available

Transcripts for LINC02272 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02272 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00007CD048_9606 lncRNA 610 4

Ensembl: ENST00000511399 (view in UCSC) ,

LncBook: HSALNT0079909,

LNCipedia: LINC02272:9,

NONCODE: NONHSAT200624.1,

URS00007BE4C8_9606 lncRNA 417 2

Ensembl: ENST00000504237 (view in UCSC) ,

LNCipedia: LINC02272:10,

URS00008C06BE_9606 lncRNA 749 3

LncBook: HSALNT0079910,

LNCipedia: LINC02272:8,

NONCODE: NONHSAT200625.1,

URS00008BF910_9606 lncRNA 489 3

LncBook: HSALNT0079911,

LNCipedia: LINC02272:7,

NONCODE: NONHSAT098949.2,

URS00008B25F7_9606 lncRNA 239 3

LncBook: HSALNT0079908,

LNCipedia: LINC02272:11,

NONCODE: NONHSAT098948.2,

LINC02272 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02272 Gene

No ASD Table

Relevant External Links for LINC02272 Gene

GeneLoc Exon Structure for
LINC02272

No data available for mRNA/cDNA for LINC02272 Gene

Expression for LINC02272 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02272 Gene

Orthologs for LINC02272 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC02272 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia -- 30
  • 100 (a)
OneToOne
Species where no ortholog for LINC02272 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC02272 Gene

ENSEMBL:
Gene Tree for LINC02272 (if available)
TreeFam:
Gene Tree for LINC02272 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02272

Paralogs for LINC02272 Gene

No data available for Paralogs for LINC02272 Gene

Variants for LINC02272 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02272 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02272 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02272
Leiden Open Variation Database (LOVD)
LINC02272

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02272 Gene

Disorders for LINC02272 Gene

Additional Disease Information for LINC02272

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02272 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02272 Gene

Publications for LINC02272 Gene

No publications were found for LINC02272 Gene.

Products for LINC02272 Gene

Sources for LINC02272 Gene