LINC02270 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2270

GC04P013482
GIFtS:
9
See more...

Aliases for LINC02270 Gene

Subcategory (RNA class) for LINC02270 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02270 Gene

  • Long Intergenic Non-Protein Coding RNA 2270 2 3 5
  • LINC02270 2 5 165
  • NONHSAG037504.2 91
  • HSALNG0032948 164

External Ids for LINC02270 Gene

Previous GeneCards Identifiers for LINC02270 Gene

  • GC04P012637
  • GC04P012803
  • GC04P012819
  • GC04P013169
  • GC04P012224
  • GC04P012227
  • GC04P012346
  • GC04P012473

Summaries for LINC02270 Gene

GeneCards Summary for LINC02270 Gene

LINC02270 (Long Intergenic Non-Protein Coding RNA 2270) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02270 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02270 Gene

Genomics for LINC02270 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC02270 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J012243 Enhancer 0.3 Ensembl ENCODE 7.3 +19.0 19038 2.6 LINC02270 piR-59156 HS3ST1
GH04J012220 Enhancer 0.2 Ensembl 9 -2.1 -2144 1.4 LINC02270 piR-38352-396 HS3ST1
GH04J012239 Enhancer 0.2 Ensembl 7.6 +16.0 15956 0.4 LINC02270 piR-59156 HS3ST1
GH04J012244 Enhancer 0.3 Ensembl 0.4 +20.8 20756 0.4 CTCF piR-59156 LINC02270 HS3ST1
GH04J012198 Enhancer 0.2 Ensembl 0.4 -24.5 -24544 0.2 LINC02270 piR-38352-396 HS3ST1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02270 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02270 Gene

Genomic Locations for LINC02270 Gene
chr4:12,223,445-12,251,286
(GRCh38/hg38)
Size:
27,842 bases
Orientation:
Plus strand
chr4:12,225,075-12,252,910
(GRCh37/hg19)
Size:
27,836 bases
Orientation:
Plus strand

Genomic View for LINC02270 Gene

Genes around LINC02270 on UCSC Golden Path with GeneCards custom track
LINC02270 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02270 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02270 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02270 Gene

Proteins for LINC02270 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02270 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02270 Gene

Domains & Families for LINC02270 Gene

Gene Families for LINC02270 Gene

HGNC:
genes like me logo Genes that share domains with LINC02270: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02270 Gene

Function for LINC02270 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02270 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02270 Gene

Localization for LINC02270 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02270 Gene

Pathways & Interactions for LINC02270 Gene

PathCards logo

SuperPathways for LINC02270 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02270 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02270 Gene

Drugs & Compounds for LINC02270 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02270 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02270 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000265AE3_9606 lncRNA 541 4

Ensembl: ENST00000515691 (view in UCSC) ,

LncBook: HSALNT0069280,

LNCipedia: LINC02270:6,

NONCODE: NONHSAT095555.2,

URS00007E4BD8_9606 lncRNA 640 2

HGNC: 53185,

RefSeq: NR_125910,

URS0000EEC3D8_9606 lncRNA 1105 1

Ensembl: ENST00000667212 (view in UCSC) ,

URS0000EF2515_9606 lncRNA 638 1

Ensembl: ENST00000505386 (view in UCSC) ,

URS0000EF5B74_9606 lncRNA 624 1

Ensembl: ENST00000667495 (view in UCSC) ,

LINC02270 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02270 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02270 Gene

No ASD Table

Relevant External Links for LINC02270 Gene

GeneLoc Exon Structure for
LINC02270

Expression for LINC02270 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02270

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02270 Gene

Orthologs for LINC02270 Gene

Evolution for LINC02270 Gene

ENSEMBL:
Gene Tree for LINC02270 (if available)
TreeFam:
Gene Tree for LINC02270 (if available)

No data available for Orthologs for LINC02270 Gene

Paralogs for LINC02270 Gene

No data available for Paralogs for LINC02270 Gene

Variants for LINC02270 Gene

Additional dbSNP identifiers (rs#s) for LINC02270 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02270 Gene

Variant ID Type Subtype PubMed ID
esv1262640 CNV insertion 17803354
esv3599671 CNV loss 21293372
esv3599677 CNV loss 21293372
esv3893883 CNV gain 25118596
nsv1009520 CNV loss 25217958
nsv1010891 CNV loss 25217958
nsv1014473 CNV gain 25217958

Additional Variant Information for LINC02270 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02270

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02270 Gene

Disorders for LINC02270 Gene

Additional Disease Information for LINC02270

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC02270 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02270 Gene

Publications for LINC02270 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02270 Gene

Products for LINC02270 Gene

Sources for LINC02270 Gene